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Package 110/264HostnameOS / ArchBUILDCHECKBUILD BIN
GraphAlignment 1.0.0
Joern P. Meier
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GraphAlignment
Last Changed Rev: 30219 / Revision: 30951
Last Changed Date: 2008-02-26 14:58:58 -0800 (Tue, 26 Feb 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  OK  OK 
Package: GraphAlignment
Version: 1.0.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check GraphAlignment_1.0.0.tar.gz
StartedAt: 2008-04-09 06:14:41 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 06:15:23 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 41.2 seconds
RetCode: 0
Status: OK
CheckDir: GraphAlignment.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/GraphAlignment.Rcheck'
* using R version 2.7.0 Under development (unstable) (2008-03-10 r44730)
* using session charset: ISO8859-1
* checking for file 'GraphAlignment/DESCRIPTION' ... OK
* this is package 'GraphAlignment' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GraphAlignment' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating GraphAlignment-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GraphAlignment-manual.tex ... OK
* checking GraphAlignment-manual.tex using pdflatex ... OK

GraphAlignment.Rcheck/00install.out:

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/GraphAlignment.Rcheck


---------- Making package GraphAlignment ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making GA_alloc.d from GA_alloc.c
making GA_matrix.d from GA_matrix.c
making GA_matrix_R.d from GA_matrix_R.c
making GA_message.d from GA_message.c
making GA_vector.d from GA_vector.c
making GA_vector_R.d from GA_vector_R.c
making GraphAlignment.d from GraphAlignment.c
making lap.d from lap.c
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c GA_alloc.c -o GA_alloc.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c GA_matrix.c -o GA_matrix.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c GA_matrix_R.c -o GA_matrix_R.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c GA_message.c -o GA_message.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c GA_vector.c -o GA_vector.o
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c GA_vector_R.c -o GA_vector_R.o
GA_vector_R.c: In function 'GA_clamp_mode_from_R':
GA_vector_R.c:139: warning: unused variable 'size'
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c GraphAlignment.c -o GraphAlignment.o
GraphAlignment.c: In function 'GA_encode_directed_graph':
GraphAlignment.c:138: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c:159: warning: suggest explicit braces to avoid ambiguous 'else'
GraphAlignment.c: In function 'GA_directed_mode_from_R':
GraphAlignment.c:264: warning: unused variable 'size'
gcc  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c lap.c -o lap.o
lap.c: In function 'LAP_lap':
lap.c:65: warning: 'min' may be used uninitialized in this function
lap.c:64: warning: 'last' may be used uninitialized in this function
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include  -i GraphAlignment_res.rc -o GraphAlignment_res.o
gcc  -std=gnu99  -shared -s  -o GraphAlignment.dll GraphAlignment.def GA_alloc.o GA_matrix.o GA_matrix_R.o GA_message.o GA_vector.o GA_vector_R.o GraphAlignment.o lap.o GraphAlignment_res.o  -Le:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'GraphAlignment'
     Formats: text html latex example chm 
  AlignNetworks                     text    html    latex   example chm
  AlignedPairs                      text    html    latex   example chm
  AnalyzeAlignment                  text    html    latex   example chm
  ComputeLinkParameters             text    html    latex   example chm
  ComputeM                          text    html    latex   example chm
  ComputeNodeParameters             text    html    latex   example chm
  ComputeScores                     text    html    latex   example chm
  CreateScoreMatrix                 text    html    latex   example chm
  EncodeDirectedGraph               text    html    latex   example chm
  GenerateExample                   text    html    latex   example chm
  GetBinNumber                      text    html    latex   example chm
  InitialAlignment                  text    html    latex   example chm
  InvertPermutation                 text    html    latex   example chm
  LinearAssignment                  text    html    latex   example chm
  MatrixToBin                       text    html    latex   example chm
  Permute                           text    html    latex   example chm
  Trace                             text    html    latex   example chm
  VectorToBin                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.2-bioc\meat\GraphAlignment.Rcheck\00_pkg_src\GraphAlignment\chm\GraphAlignment.chm


Compile time: 0 minutes, 0 seconds
19	Topics
75	Local links
0	Internet links
1	Graphic


Created e:\biocbld\bbs-2.2-bioc\meat\GraphAlignment.Rcheck\00_pkg_src\GraphAlignment\chm\GraphAlignment.chm, 32,305 bytes
Compression decreased file by 26,299 bytes.
  adding MD5 sums

* DONE (GraphAlignment)