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Package 99/264HostnameOS / ArchBUILDCHECKBUILD BIN
GenomeGraphs 0.99.1
Steffen Durinck
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomeGraphs
Last Changed Rev: 30849 / Revision: 30951
Last Changed Date: 2008-04-04 12:23:11 -0700 (Fri, 04 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64  ERROR  skipped 
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ ERROR ] skipped  skipped 
pelham Mac OS X Leopard (10.5.1) / i386  ERROR  skipped  skipped 
Package: GenomeGraphs
Version: 0.99.1
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD build GenomeGraphs
StartedAt: 2008-04-09 04:18:08 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 04:19:35 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 86.4 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* preparing 'GenomeGraphs':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst511693222


---------- Making package GenomeGraphs ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing data files
  preparing package GenomeGraphs for lazy loading
Loading required package: biomaRt
Loading required package: RCurl
Loading required package: grid
  installing man source files
  installing indices
  not zipping data
  installing help
Note: removing empty section \references
Note: removing empty section \references
 >>> Building/Updating help pages for package 'GenomeGraphs'
     Formats: text html latex example chm 
  BaseTrack-class                   text    html    latex   example chm
  DisplayPars-class                 text    html    latex   example chm
  DisplayPars                       text    html    latex   example chm
  ExonArray-class                   text    html    latex   example chm
  Gene-class                        text    html    latex   example chm
  GeneModel-class                   text    html    latex   example chm
  GeneRegion-class                  text    html    latex   example chm
  GenericArray-class                text    html    latex   example chm
  GenomeAxis-class                  text    html    latex   example chm
  HighlightRegion-class             text    html    latex   example chm
  Ideogram-class                    text    html    latex   example chm
  Legend-class                      text    html    latex   example chm
  MappedRead-class                  text    html    latex   example chm
  Segmentation-class                text    html    latex   example chm
  Title-class                       text    html    latex   example chm
  Transcript-class                  text    html    latex   example chm
  TranscriptRegion-class            text    html    latex   example chm
  cn                                text    html    latex   example chm
  exonProbePos                      text    html    latex   example chm
  gdObject-class                    text    html    latex   example chm
  gdPlot                            text    html    latex   example chm
  getPar                            text    html    latex   example chm
  ideogramTab                       text    html    latex   example chm
  intensity                         text    html    latex   example chm
  probestart                        text    html    latex   example chm
  segEnd                            text    html    latex   example chm
  segStart                          text    html    latex   example chm
  segments                          text    html    latex   example chm
  setPar                            text    html    latex   example chm
  unrData                           text    html    latex   example chm
  unrNProbes                        text    html    latex   example chm
  unrPositions                      text    html    latex   example chm
  yeastCons1                        text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.2-bioc\meat\GenomeGraphs\chm\GenomeGraphs.chm





Compile time: 0 minutes, 0 seconds

34	Topics

110	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.2-bioc\meat\GenomeGraphs\chm\GenomeGraphs.chm, 42,435 bytes

Compression decreased file by 53,587 bytes.

  adding MD5 sums

* DONE (GenomeGraphs)
* creating vignettes ... ERROR
Loading required package: biomaRt
Loading required package: RCurl
Loading required package: grid
                                                                                                                                                                                                                                                                                                                     V1
1 Query ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ensembl_mart_49: DBI connect('database=ensembl_mart_49;host=martdb.ensembl.org;port=5316','anonymous',...) failed: Too many connections at /ebi/www/biomart/www/biomart-perl-06/lib/BioMart/Configuration/DBLocation.pm line 98
Error in getBM(c("structure_gene_stable_id", "structure_transcript_stable_id",  : 
  Number of columns in the query result doesn't equal number of attributes in query.  This is probably an internal error, please report.
Error: processing vignette 'GenomeGraphs.Rnw' failed with diagnostics:
Error in getBM(c("structure_gene_stable_id", "structure_transcript_stable_id",  : 
  Number of columns in the query result doesn't equal number of attributes in query.  This is probably an internal error, please report.
Execution halted