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Package 99/264HostnameOS / ArchBUILDCHECKBUILD BIN
GenomeGraphs 0.99.1
Steffen Durinck
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GenomeGraphs
Last Changed Rev: 30849 / Revision: 30951
Last Changed Date: 2008-04-04 12:23:11 -0700 (Fri, 04 Apr 2008)
lamb1 Linux (SUSE 10.1) / x86_64 [ ERROR ] skipped 
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.1) / i386  ERROR  skipped  skipped 
Package: GenomeGraphs
Version: 0.99.1
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build GenomeGraphs
StartedAt: 2008-04-09 03:27:03 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 03:27:53 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 49.5 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* preparing 'GenomeGraphs':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'GenomeGraphs' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: biomaRt
Loading required package: RCurl
Loading required package: grid
** help
Note: removing empty section \references
 >>> Building/Updating help pages for package 'GenomeGraphs'
     Formats: text html latex example 
  BaseTrack-class                   text    html    latex   example
  DisplayPars-class                 text    html    latex   example
  DisplayPars                       text    html    latex   example
  ExonArray-class                   text    html    latex   example
  Gene-class                        text    html    latex   example
  GeneModel-class                   text    html    latex   example
  GeneRegion-class                  text    html    latex   example
  GenericArray-class                text    html    latex   example
  GenomeAxis-class                  text    html    latex   example
  HighlightRegion-class             text    html    latex   example
  Ideogram-class                    text    html    latex   example
  Legend-class                      text    html    latex   example
  MappedRead-class                  text    html    latex   example
  Segmentation-class                text    html    latex   example
  Title-class                       text    html    latex   example
  Transcript-class                  text    html    latex   example
  TranscriptRegion-class            text    html    latex   example
  cn                                text    html    latex   example
  exonProbePos                      text    html    latex   example
  gdObject-class                    text    html    latex   example
  gdPlot                            text    html    latex   example
  getPar                            text    html    latex   example
  ideogramTab                       text    html    latex   example
  intensity                         text    html    latex   example
  probestart                        text    html    latex   example
  segEnd                            text    html    latex   example
  segStart                          text    html    latex   example
  segments                          text    html    latex   example
  setPar                            text    html    latex   example
  unrData                           text    html    latex   example
  unrNProbes                        text    html    latex   example
  unrPositions                      text    html    latex   example
  yeastCons1                        text    html    latex   example
** building package indices ...
* DONE (GenomeGraphs)
* creating vignettes ... ERROR
Loading required package: biomaRt
Loading required package: RCurl
Loading required package: grid
                                                                                                                                                                                                                                                                                                                     V1
1 Query ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ensembl_mart_49: DBI connect('database=ensembl_mart_49;host=martdb.ensembl.org;port=5316','anonymous',...) failed: Too many connections at /ebi/www/biomart/www/biomart-perl-06/lib/BioMart/Configuration/DBLocation.pm line 98
Error in getBM(c("structure_gene_stable_id", "structure_transcript_stable_id",  : 
  Number of columns in the query result doesn't equal number of attributes in query.  This is probably an internal error, please report.
Error: processing vignette 'GenomeGraphs.Rnw' failed with diagnostics:
Error in getBM(c("structure_gene_stable_id", "structure_transcript_stable_id",  : 
  Number of columns in the query result doesn't equal number of attributes in query.  This is probably an internal error, please report.
Execution halted