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Package 47/264HostnameOS / ArchBUILDCHECKBUILD BIN
BufferedMatrixMethods 1.3.5
B. M. Bolstad
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BufferedMatrixMethods
Last Changed Rev: 30309 / Revision: 30951
Last Changed Date: 2008-03-01 07:13:01 -0800 (Sat, 01 Mar 2008)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK [ OK ]
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.1) / i386  OK  OK  OK 
Package: BufferedMatrixMethods
Version: 1.3.5
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check BufferedMatrixMethods_1.3.5.tar.gz
StartedAt: 2008-04-09 03:51:30 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 03:51:46 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 16.5 seconds
RetCode: 0
Status: OK
CheckDir: BufferedMatrixMethods.Rcheck
Warnings: 0

Command output

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/BufferedMatrixMethods.Rcheck'
* using R version 2.7.0 beta (2008-04-07 r45159)
* using session charset: ISO8859-1
* checking for file 'BufferedMatrixMethods/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BufferedMatrixMethods' version '1.3.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BufferedMatrixMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating BufferedMatrixMethods-Ex.R ... OK
* checking examples ... OK
* creating BufferedMatrixMethods-manual.tex ... OK
* checking BufferedMatrixMethods-manual.tex using pdflatex ... OK

BufferedMatrixMethods.Rcheck/00install.out:

* Installing *source* package 'BufferedMatrixMethods' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.2-bioc/R/library/BufferedMatrix/include"   -fpic  -g -O2 -Wall -c init_package.c -o init_package.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include -I"/home/biocbuild/bbs-2.2-bioc/R/library/BufferedMatrix/include"   -fpic  -g -O2 -Wall -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:343: warning: unused variable 'i'
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:377: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:592: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1150: warning: unused variable 'current_mode'
preprocess_bm.c: At top level:
preprocess_bm.c:452: warning: 'min' defined but not used
gcc -std=gnu99 -shared -L/usr/local/lib64 -o BufferedMatrixMethods.so init_package.o preprocess_bm.o   -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** preparing package for lazy loading
Loading required package: BufferedMatrix
** help
 >>> Building/Updating help pages for package 'BufferedMatrixMethods'
     Formats: text html latex example 
  BM_affyDataInput                  text    html    latex
  BM_justRMA                        text    html    latex
  BM_readcelfiles                   text    html    latex
  rmapreprocess.bufferedmatrix      text    html    latex
** building package indices ...
* DONE (BufferedMatrixMethods)