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Package 33/264HostnameOS / ArchBUILDCHECKBUILD BIN
BGmix 0.9.0
Alex Lewin
Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BGmix
Last Changed Rev: 29137 / Revision: 30951
Last Changed Date: 2007-12-10 18:44:31 -0800 (Mon, 10 Dec 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.1) / i386  OK  OK [ OK ]
Package: BGmix
Version: 0.9.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh BGmix_0.9.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R BGmix.buildbin-libdir
StartedAt: 2008-04-09 07:15:53 -0700 (Wed, 09 Apr 2008)
EndedAt: 2008-04-09 07:17:16 -0700 (Wed, 09 Apr 2008)
EllapsedTime: 82.4 seconds
RetCode: 0
Status: OK
PackageFile: BGmix_0.9.0.tgz
PackageFileSize: 375.6 KiB

Command output

                INSTALLATION WITH 'R CMD INSTALL BGmix_0.9.0.tar.gz'

* Installing to library 'BGmix.buildbin-libdir'
* Installing *source* package 'BGmix' ...
checking for gcc... gcc-4.2 -arch i386 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch i386 -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch i386 -std=gnu99 option to accept ISO C89... none needed
checking for gcc-4.2 -arch i386 -std=gnu99 option to accept ISO C99... none needed
checking for cos in -lm... yes
checking for cblas_dgemm in -lgslcblas... yes
checking for gsl_blas_dgemm in -lgsl... yes
Untarring Boost header files...
checking for an ANSI C-conforming const... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I ../boostIncl -I/usr/local/include    -fPIC  -g -O2 -march=nocona -Wall -DUSING_R -c BGmix_main.cpp -o BGmix_main.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I ../boostIncl -I/usr/local/include    -fPIC  -g -O2 -march=nocona -Wall -DUSING_R -c rundir.cpp -o rundir.o
g++-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I ../boostIncl -I/usr/local/include    -fPIC  -g -O2 -march=nocona -Wall -DUSING_R -c updates_BGmix.cpp -o updates_BGmix.o
g++-4.0 -arch i386 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BGmix.so BGmix_main.o rundir.o updates_BGmix.o -lgsl -lgslcblas -lm   -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
rm -r ../boostIncl 
** R
** data
** inst
** preparing package for lazy loading
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
** help
 >>> Building/Updating help pages for package 'BGmix'
     Formats: text html latex example 
  BGmix-package                     text    html    latex   example
  BGmix                             text    html    latex   example
  EstimatePi0                       text    html    latex   example
  FDRforTailPP                      text    html    latex   example
  FDRplotTailPP                     text    html    latex   example
  TailPP                            text    html    latex   example
  calcFDR                           text    html    latex   example
  ccParams                          text    html    latex   example
  ccPred                            text    html    latex   example
  ccSummary                         text    html    latex   example
  ccTrace                           text    html    latex   example
  histTailPP                        text    html    latex   example
  plotBasic                         text    html    latex   example
  plotCompare                       text    html    latex   example
  plotFDR                           text    html    latex   example
  plotMixDensity                    text    html    latex   example
  plotPredChecks                    text    html    latex   example
  plotTrace                         text    html    latex   example
  readBGX                           text    html    latex
  ss                                text    html    latex
  ybar                              text    html    latex
** building package indices ...
* DONE (BGmix)

                INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --libs-only BGmix_0.9.0.tar.gz'

* Installing to library 'BGmix.buildbin-libdir'
* Installing *source* package 'BGmix' ...
checking for gcc... gcc-4.2 -arch ppc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch ppc -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch ppc -std=gnu99 option to accept ISO C89... none needed
checking for gcc-4.2 -arch ppc -std=gnu99 option to accept ISO C99... none needed
checking for cos in -lm... yes
checking for cblas_dgemm in -lgslcblas... yes
checking for gsl_blas_dgemm in -lgsl... yes
Untarring Boost header files...
checking for an ANSI C-conforming const... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - ppc
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I ../boostIncl -I/usr/local/include    -fPIC  -g -O2 -Wall -DUSING_R -c BGmix_main.cpp -o BGmix_main.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I ../boostIncl -I/usr/local/include    -fPIC  -g -O2 -Wall -DUSING_R -c rundir.cpp -o rundir.o
g++-4.0 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I ../boostIncl -I/usr/local/include    -fPIC  -g -O2 -Wall -DUSING_R -c updates_BGmix.cpp -o updates_BGmix.o
g++-4.0 -arch ppc -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BGmix.so BGmix_main.o rundir.o updates_BGmix.o -lgsl -lgslcblas -lm   -F/Library/Frameworks/R.framework/.. -framework R -lintl -liconv -lc -Wl,-framework -Wl,CoreFoundation
rm -r ../boostIncl 
* DONE (BGmix)

                INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --libs-only BGmix_0.9.0.tar.gz'

* Installing to library 'BGmix.buildbin-libdir'
* Installing *source* package 'BGmix' ...
checking for gcc... gcc-4.2 -arch x86_64 -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes
checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C89... none needed
checking for gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C99... none needed
checking for cos in -lm... yes
checking for cblas_dgemm in -lgslcblas... yes
checking for gsl_blas_dgemm in -lgsl... yes
Untarring Boost header files...
checking for an ANSI C-conforming const... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - x86_64
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I ../boostIncl -I/usr/local/include    -fPIC  -g -O2 -Wall -DUSING_R -c BGmix_main.cpp -o BGmix_main.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I ../boostIncl -I/usr/local/include    -fPIC  -g -O2 -Wall -DUSING_R -c rundir.cpp -o rundir.o
g++-4.0 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I ../boostIncl -I/usr/local/include    -fPIC  -g -O2 -Wall -DUSING_R -c updates_BGmix.cpp -o updates_BGmix.o
g++-4.0 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names  -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BGmix.so BGmix_main.o rundir.o updates_BGmix.o -lgsl -lgslcblas -lm   -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
rm -r ../boostIncl 
* DONE (BGmix)