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Package 243/251HostnameOS / ArchBUILDCHECKBUILD BIN
vbmp 1.7.0
Nicola Lama
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/vbmp
Last Changed Rev: 27716 / Revision: 29143
Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK [ OK ]
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: vbmp
Version: 1.7.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check vbmp_1.7.0.tar.gz
StartedAt: 2007-12-11 05:09:54 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 05:13:13 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 198.7 seconds
RetCode: 0
Status: OK
CheckDir: vbmp.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/vbmp.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'vbmp/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'vbmp' version '1.7.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'vbmp' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating vbmp-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './vbmp.tex' ...
Package natbib Warning: Citation `Girolami2006' on page 1 undefined on input li
Package natbib Warning: Citation `Kote-Jarai2006' on page 1 undefined on input 
Package natbib Warning: Citation `Neal1998' on page 1 undefined on input line 6
Package natbib Warning: Citation `Kote-Jarai2006' on page 5 undefined on input 
Package natbib Warning: Citation `Kote-Jarai2006' on page 5 undefined on input 
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './vbmp.tex' ...
Package natbib Warning: Citation `Girolami2006' on page 1 undefined on input li
Package natbib Warning: Citation `Kote-Jarai2006' on page 1 undefined on input 
Package natbib Warning: Citation `Neal1998' on page 1 undefined on input line 6
Package natbib Warning: Citation `Kote-Jarai2006' on page 5 undefined on input 
Package natbib Warning: Citation `Kote-Jarai2006' on page 5 undefined on input 
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './vbmp.tex' ...
* creating vbmp-manual.tex ... OK
* checking vbmp-manual.tex ... OK

vbmp.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/vbmp.Rcheck
* Installing *source* package 'vbmp' ...
** R
** data
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'vbmp'
     Formats: text html latex example 
  BRCA12                            text    html    latex
  covParams                         text    html    latex
  lowerBound                        text    html    latex
  plotDiagnostics                   text    html    latex
  predClass                         text    html    latex
  predError                         text    html    latex
  predLik                           text    html    latex
  vbmp                              text    html    latex   example
** building package indices ...
* DONE (vbmp)