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Package 232/251HostnameOS / ArchBUILDCHECKBUILD BIN
sscore 1.11.0
Richard Kennedy
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/sscore
Last Changed Rev: 27716 / Revision: 29143
Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: sscore
Version: 1.11.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check sscore_1.11.0.tar.gz
StartedAt: 2007-12-11 08:45:29 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 08:47:46 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 137.0 seconds
RetCode: 0
Status: OK
CheckDir: sscore.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/sscore.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'sscore/DESCRIPTION' ... OK
* this is package 'sscore' version '1.11.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'sscore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
computeAffxSFandSDT: no visible binding for global variable ‘logI’
computeSFandSDT: no visible binding for global variable ‘logI’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating sscore-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './sscore.tex' ...
Package natbib Warning: Citation `zhang2002' on page 2 undefined on input line 
Package natbib Warning: Citation `kerns2003' on page 2 undefined on input line 
Package natbib Warning: Citation `kennedy2006' on page 2 undefined on input lin
Package natbib Warning: Citation `kennedy2006b' on page 2 undefined on input li
Package natbib Warning: Citation `affy:tech:2002' on page 10 undefined on input
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './sscore.tex' ...
Package natbib Warning: Citation `zhang2002' on page 2 undefined on input line 
Package natbib Warning: Citation `kerns2003' on page 2 undefined on input line 
Package natbib Warning: Citation `kennedy2006' on page 2 undefined on input lin
Package natbib Warning: Citation `kennedy2006b' on page 2 undefined on input li
Package natbib Warning: Citation `affy:tech:2002' on page 10 undefined on input
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './sscore.tex' ...
* creating sscore-manual.tex ... OK
* checking sscore-manual.tex ... OK

sscore.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/sscore.Rcheck
* Installing *source* package 'sscore' ...
** R
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: preprocessCore
** help
 >>> Building/Updating help pages for package 'sscore'
     Formats: text html latex example 
  OneStepBiweightAlgorithm          text    html    latex
  SScore                            text    html    latex   example
  SScoreBatch                       text    html    latex   example
  computeAffxRawQ                   text    html    latex
  computeAffxSFandSDT               text    html    latex   example
  computeOutlier                    text    html    latex   example
  computeRawQ                       text    html    latex
  computeSFandSDT                   text    html    latex   example
  computeZoneIInfo                  text    html    latex
  computeZonenoise                  text    html    latex
  trimMean                          text    html    latex
** building package indices ...
* DONE (sscore)