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Package 219/251HostnameOS / ArchBUILDCHECKBUILD BIN
siggenes 1.13.1
Holger Schwender
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/siggenes
Last Changed Rev: 28186 / Revision: 29143
Last Changed Date: 2007-10-24 04:27:42 -0700 (Wed, 24 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  ERROR  skipped 
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
wellington Linux (openSUSE 10.3) / i686  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
lemming Windows Server 2003 (32-bit) / x64 [ ERROR ] skipped  skipped 
Package: siggenes
Version: 1.13.1
Command: D:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD build siggenes
StartedAt: 2007-12-11 03:11:49 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 03:12:55 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 66.4 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'siggenes/DESCRIPTION' ... OK
* preparing 'siggenes':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.2-bioc/tmpdir/Rinst322415841


---------- Making package siggenes ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  preparing package siggenes for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Creating a new generic function for "print" in "siggenes"
Creating a new generic function for "identify" in "siggenes"
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'siggenes'
     Formats: text html latex example chm 
  EBAM-class                        text    html    latex   example chm
  FindA0-class                      text    html    latex           chm
  SAM-class                         text    html    latex   example chm
  cat.ebam                          text    html    latex           chm
  cat.stat                          text    html    latex           chm
  d.stat                            text    html    latex           chm
  delta.plot                        text    html    latex   example chm
  denspr                            text    html    latex           chm
  ebam                              text    html    latex   example chm
  find.a0                           text    html    latex   example chm
  findDelta                         text    html    latex           chm
  fudge2                            text    html    latex           chm
  help.ebam                         text    html    latex   example chm
  help.finda0                       text    html    latex   example chm
  help.sam                          text    html    latex   example chm
  link.genes                        text    html    latex           chm
  link.siggenes                     text    html    latex           chm
  list.siggenes                     text    html    latex   example chm
  nclass.wand                       text    html    latex           chm
  pi0.est                           text    html    latex   example chm
  plotArguments                     text    html    latex           chm
  plotFindArguments                 text    html    latex           chm
  qvalue.cal                        text    html    latex   example chm
  rowWilcoxon                       text    html    latex           chm
  sam                               text    html    latex   example chm
  sam.plot2                         text    html    latex   example chm
  siggenes-internal                 text    html    latex           chm
  siggenes2excel                    text    html    latex           chm
  siggenes2html                     text    html    latex           chm
  sumSAM-class                      text    html    latex           chm
  wilc.ebam                         text    html    latex           chm
  wilc.stat                         text    html    latex           chm
  z.ebam                            text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.2-bioc\meat\siggenes\chm\siggenes.chm





Compile time: 0 minutes, 2 seconds

34	Topics

211	Local links

2	Internet links

1	Graphic





Created d:\biocbld\bbs-2.2-bioc\meat\siggenes\chm\siggenes.chm, 86,381 bytes

Compression decreased file by 125,354 bytes.

  adding MD5 sums

* DONE (siggenes)
* creating vignettes ... ERROR
Loading required package: multtest
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines

Latest major changes in siggenes:
Version 1.9.27: EBAM update completed. Added new vignette.
Version 1.11.7: Improved version of EBAM for categorical data.
Version 1.11.9: Added findDelta for determining the number of genes called
                differentially expressed for a given FDR, and vice versa.

Loading required package: genefilter

Error: processing vignette 'siggenes.Rnw' failed with diagnostics:
 chunk 35 
Error in qt(p, df, lower.tail, log.p) : 
  Non-numeric argument to mathematical function
Execution halted