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Package 184/251HostnameOS / ArchBUILDCHECKBUILD BIN
rama 1.12.0
Raphael Gottardo
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rama
Last Changed Rev: 29127 / Revision: 29143
Last Changed Date: 2007-12-10 08:46:24 -0800 (Mon, 10 Dec 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: rama
Version: 1.12.0
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD INSTALL --build --library=rama.buildbin-libdir rama_1.12.0.tar.gz
StartedAt: 2007-12-11 06:42:20 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 06:42:43 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 23.2 seconds
RetCode: 0
Status: OK
PackageFile: rama_1.12.0.zip
PackageFileSize: 517.8 KiB

Command output

installing R.css in E:/biocbld/bbs-2.2-bioc/meat/rama.buildbin-libdir

Using auto-selected zip options 'rama-ZIPDATA=zip'

---------- Making package rama ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making estimation_slice.d from estimation_slice.c
making ex_estimation_slice.d from ex_estimation_slice.c
making mean.sd.d from mean.sd.c
making reorder.d from reorder.c
making util.d from util.c
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c estimation_slice.c -o estimation_slice.o
estimation_slice.c: In function 'mcmc_shift':
estimation_slice.c:122: warning: unused variable 'SSeps_sd_new'
estimation_slice.c:121: warning: unused variable 'SSeps_sd'
estimation_slice.c:117: warning: unused variable 'pi'
estimation_slice.c:116: warning: unused variable 'SS12'
estimation_slice.c:116: warning: unused variable 'SSR2'
estimation_slice.c:116: warning: unused variable 'SSR1'
estimation_slice.c:115: warning: unused variable 'dens_epsilon_new'
estimation_slice.c:115: warning: unused variable 'dens_epsilon'
estimation_slice.c:114: warning: unused variable 'l_epsilon_new'
estimation_slice.c:114: warning: unused variable 'l_epsilon'
estimation_slice.c:113: warning: unused variable 'lambda_eps2_new'
estimation_slice.c:113: warning: unused variable 'lambda_eps1_new'
estimation_slice.c: In function 'slice_sampling_lambda_eps':
estimation_slice.c:484: warning: suggest parentheses around comparison in operand of &
estimation_slice.c:493: warning: suggest parentheses around comparison in operand of &
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c ex_estimation_slice.c -o ex_estimation_slice.o
ex_estimation_slice.c: In function 'mcmc':
ex_estimation_slice.c:144: warning: unused variable 'old_a'
ex_estimation_slice.c:143: warning: unused variable 'old_b'
ex_estimation_slice.c:138: warning: unused variable 'sum_res2'
ex_estimation_slice.c:137: warning: unused variable 'sum_res1'
ex_estimation_slice.c:119: warning: unused variable 'dens_t_new'
ex_estimation_slice.c:119: warning: unused variable 'dens_t'
ex_estimation_slice.c:112: warning: unused variable 'pi'
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c mean.sd.c -o mean.sd.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c reorder.c -o reorder.o
gcc-sjlj  -std=gnu99  -IE:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c util.c -o util.o
util.c: In function 'product_mat_vec':
util.c:574: warning: unused variable 'k'
util.c: In function 'slice_sampling_a':
util.c:629: warning: suggest parentheses around comparison in operand of |
util.c:629: warning: suggest parentheses around comparison in operand of &
util.c:636: warning: suggest parentheses around comparison in operand of &
util.c:643: warning: suggest parentheses around comparison in operand of &
util.c:613: warning: unused variable 'v'
util.c: In function 'slice_sampling_b':
util.c:703: warning: suggest parentheses around comparison in operand of |
util.c:703: warning: suggest parentheses around comparison in operand of &
util.c:710: warning: suggest parentheses around comparison in operand of &
util.c:717: warning: suggest parentheses around comparison in operand of &
util.c:686: warning: unused variable 'v'
util.c: In function 'slice_sampling_b2':
util.c:767: warning: suggest parentheses around comparison in operand of &
util.c:775: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_a2':
util.c:822: warning: suggest parentheses around comparison in operand of &
util.c:830: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_rho':
util.c:876: warning: suggest parentheses around comparison in operand of |
util.c:876: warning: suggest parentheses around comparison in operand of &
util.c:883: warning: suggest parentheses around comparison in operand of &
util.c:890: warning: suggest parentheses around comparison in operand of &
util.c:860: warning: unused variable 'v'
util.c: In function 'slice_sampling_rho2':
util.c:935: warning: suggest parentheses around comparison in operand of &
util.c:944: warning: suggest parentheses around comparison in operand of &
util.c: In function 'slice_sampling_shift':
util.c:1019: warning: suggest parentheses around comparison in operand of |
util.c:1019: warning: suggest parentheses around comparison in operand of &
util.c:1026: warning: suggest parentheses around comparison in operand of &
util.c:1033: warning: suggest parentheses around comparison in operand of &
util.c:1000: warning: unused variable 'v'
util.c: In function 'slice_sampling_shift2':
util.c:1100: warning: suggest parentheses around comparison in operand of &
util.c:1108: warning: suggest parentheses around comparison in operand of &
util.c:1082: warning: unused variable 'v'
util.c: In function 'slice_sampling_p':
util.c:1248: warning: suggest parentheses around comparison in operand of &
util.c:1256: warning: suggest parentheses around comparison in operand of &
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I E:/biocbld/bbs-2.2-bioc/R/include  -i rama_res.rc -o rama_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o rama.dll rama.def estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o rama_res.o  -LE:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  zipping data
  installing help
Note: ignoring empty \keyword entries
Note: ignoring empty \keyword entries
Note: removing empty section \details
Note: removing empty section \details
 >>> Building/Updating help pages for package 'rama'
     Formats: text html latex example chm 
  arrange.row                       text    html    latex   example chm
  est.shift                         text    html    latex   example chm
  fit.model                         text    html    latex   example chm
  hiv                               text    html    latex           chm
  is.row.na                         text    html    latex   example chm
  ls.effect                         text    html    latex   example chm
  mat.mean                          text    html    latex   example chm
  ratio.plot                        text    html    latex   example chm
  weight.plot                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.5360\rama\chm\rama.chm





Compile time: 0 minutes, 0 seconds

10	Topics

18	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.2-bioc\meat\R.INSTALL.5360\rama\chm\rama.chm, 28,449 bytes

Compression decreased file by 9,636 bytes.

  adding MD5 sums

packaged installation of package 'rama' as rama_1.12.0.zip
* DONE (rama)