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Package 175/251HostnameOS / ArchBUILDCHECKBUILD BIN
plw 0.99.2
Magnus Astrand
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/plw
Last Changed Rev: 29054 / Revision: 29143
Last Changed Date: 2007-12-05 15:29:37 -0800 (Wed, 05 Dec 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 [ ERROR ] skipped  skipped 
lemming Windows Server 2003 (32-bit) / x64  ERROR  skipped  skipped 
Package: plw
Version: 0.99.2
Command: E:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD build plw
StartedAt: 2007-12-11 03:56:44 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 03:57:20 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 35.8 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'plw/DESCRIPTION' ... OK
* preparing 'plw':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst30058645


---------- Making package plw ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making SpecialFunctions.d from SpecialFunctions.c
making SpecialOptim.d from SpecialOptim.c
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c SpecialFunctions.c -o SpecialFunctions.o
SpecialFunctions.c: In function 'getPosteriorMeansAndOdds':
SpecialFunctions.c:20: warning: unused variable 'j'
SpecialFunctions.c: In function 'order_stat_by_index':
SpecialFunctions.c:565: warning: suggest parentheses around comparison in operand of &
SpecialFunctions.c: In function 'median_by_index':
SpecialFunctions.c:594: warning: suggest parentheses around comparison in operand of &
SpecialFunctions.c: In function 'mad_by_index':
SpecialFunctions.c:616: warning: suggest parentheses around comparison in operand of &
SpecialFunctions.c: In function 'mean_by_index':
SpecialFunctions.c:639: warning: suggest parentheses around comparison in operand of &
SpecialFunctions.c: In function 'sd_by_index':
SpecialFunctions.c:662: warning: suggest parentheses around comparison in operand of &
gcc-sjlj  -std=gnu99  -Ie:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c SpecialOptim.c -o SpecialOptim.o
SpecialOptim.c:10: warning: 'matrix' defined but not used
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include  -i plw_res.rc -o plw_res.o
gcc-sjlj  -std=gnu99  -shared -s  -o plw.dll plw.def SpecialFunctions.o SpecialOptim.o plw_res.o  -Le:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  preparing package plw for lazy loading
Loading required package: MASS
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: preprocessCore
Loading required package: splines
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'plw'
     Formats: text html latex example chm 
  AffySpikeU95Subset                text    html    latex           chm
  estimateMVbeta                    text    html    latex           chm
  estimateSigma                     text    html    latex           chm
  estimateSigmaMV                   text    html    latex           chm
  estimateSigmaMVbeta               text    html    latex           chm
  getKnots                          text    html    latex           chm
  lmw                               text    html    latex   example chm
  logitT                            text    html    latex   example chm
  plw-package                       text    html    latex           chm
  plw                               text    html    latex   example chm
  scaleParameterPlot                text    html    latex   example chm
  statByIndex                       text    html    latex   example chm
  topRankSummary                    text    html    latex   example chm
  varHistPlot                       text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.2-bioc\meat\plw\chm\plw.chm





Compile time: 0 minutes, 1 second

15	Topics

39	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.2-bioc\meat\plw\chm\plw.chm, 36,658 bytes

Compression decreased file by 31,030 bytes.

  adding MD5 sums

* DONE (plw)
* creating vignettes ... ERROR
Loading required package: plw
Loading required package: MASS
Loading required package: affy
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: preprocessCore
Loading required package: splines
trying URL 'http://www.math.chalmers.se/~astrandm/plw/ApoAI.RData'
Content type 'text/plain' length 1144526 bytes (1.1 Mb)
opened URL
downloaded 1.1 Mb


Error: processing vignette 'HowToPLW.Rnw' failed with diagnostics:
 chunk 16 
Error in load(tempFile) : error reading from connection
Execution halted