Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O [P] Q  R  S  T  U  V  W  X  Y  Z 

Package 165/251HostnameOS / ArchBUILDCHECKBUILD BIN
pcaMethods 1.15.2
Wolfram Stacklies
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/pcaMethods
Last Changed Rev: 27836 / Revision: 29143
Last Changed Date: 2007-10-08 03:33:45 -0700 (Mon, 08 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64 [ ERROR ] skipped 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: pcaMethods
Version: 1.15.2
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build pcaMethods
StartedAt: 2007-12-11 02:25:27 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 02:25:32 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 4.5 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'pcaMethods/DESCRIPTION' ... OK
* preparing 'pcaMethods':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
/tmp/Rinst2357572921
* Installing *source* package 'pcaMethods' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: MASS
Loading required package: pls

Attaching package: 'pls'


	The following object(s) are masked from package:stats :

	 loadings 

Creating a new generic function for "print" in "pcaMethods"
Creating a new generic function for "summary" in "pcaMethods"
Creating a new generic function for "fitted" in "pcaMethods"
** help
Note: unmatched right brace in 'nlpca' on or after line 60
 >>> Building/Updating help pages for package 'pcaMethods'
     Formats: text html latex example 
  Q2                                text    html    latex   example
  asExprSet                         text    html    latex
  bpca                              text    html    latex   example
  checkData                         text    html    latex
  class.nlpcaNet                    text    html    latex
  class.nniRes                      text    html    latex
  class.pcaRes                      text    html    latex
  fitted.pcaRes                     text    html    latex
  helix                             text    html    latex
  kEstimate                         text    html    latex   example
  kEstimateFast                     text    html    latex   example
  llsImpute                         text    html    latex   example
  metaboliteData                    text    html    latex
  metaboliteDataComplete            text    html    latex
  nipalsPca                         text    html    latex   example
  nlpca                             text    html    latex   example
  nni                               text    html    latex   example
  pca                               text    html    latex   example
  plotPcs                           text    html    latex   example
  plotR2                            text    html    latex
  ppca                              text    html    latex   example
  prep                              text    html    latex   example
  robustPca                         text    html    latex   example
  robustSvd                         text    html    latex   example
  slplot                            text    html    latex   example
  svdImpute                         text    html    latex   example
  svdPca                            text    html    latex   example
** building package indices ...
* DONE (pcaMethods)
* creating vignettes ... ERROR
Loading required package: MASS
Loading required package: pls

Attaching package: 'pls'


	The following object(s) are masked from package:stats :

	 loadings 


Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './missingValues.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './missingValues.tex' ...

Error: processing vignette 'outliers.Rnw' failed with diagnostics:
 chunk 3 
Error in robustSvd(mat) : 
  The aroma.light package is required in order to use this function.
The package is available at www.bioconductor.org
In addition: Warning messages:
1: The exprSet class is deprecated, use ExpressionSet instead 
2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called 'aroma.light'
Execution halted