occugene 0.1.0
Oliver Will
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/occugene | | Last Changed Rev: 28102 / Revision: 29143 | | Last Changed Date: 2007-10-21 09:04:35 -0700 (Sun, 21 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | [ WARNINGS ] | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | WARNINGS | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/occugene.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'occugene/DESCRIPTION' ... OK
* this is package 'occugene' version '0.1.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'occugene' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
Rd files with unknown encoding:
etDelta.Rd
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating occugene-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './occugene.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './occugene.tex' ...
* creating occugene-manual.tex ... OK
* checking occugene-manual.tex ... OK
WARNING: There was 1 warning, see
/loc/home/biocbuild/bbs-2.2-bioc/meat/occugene.Rcheck/00check.log
for details
/loc/home/biocbuild/bbs-2.2-bioc/meat/occugene.Rcheck
* Installing *source* package 'occugene' ...
** R
** data
** inst
** preparing package for lazy loading
** help
Note: unmatched right brace in 'fCumul' on or after line 6
>>> Building/Updating help pages for package 'occugene'
Formats: text html latex example
binHist text html latex example
binInsert text html latex example
binInsertHist text html latex example
checkFormat text html latex example
delta0 text html latex example
eMult text html latex example
etDelta text html latex example
fCumul text html latex example
fFit text html latex example
loadAnnotation text html latex example
loadInsertions text html latex example
occup2Negenes text html latex example
sampleAnnotation text html latex
sampleInsertions text html latex
unbiasB0 text html latex example
unbiasDelta0 text html latex example
varMult text html latex example
** building package indices ...
* DONE (occugene)