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Package 130/251HostnameOS / ArchBUILDCHECKBUILD BIN
makecdfenv 1.17.0
James W. MacDonald
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/makecdfenv
Last Changed Rev: 27716 / Revision: 29143
Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ OK ] OK 
Package: makecdfenv
Version: 1.17.0
Command: D:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check makecdfenv_1.17.0.tar.gz
StartedAt: 2007-12-11 06:49:27 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 06:52:46 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 199.2 seconds
RetCode: 0
Status: OK
CheckDir: makecdfenv.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.2-bioc/meat/makecdfenv.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'makecdfenv/DESCRIPTION' ... OK
* this is package 'makecdfenv' version '1.17.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'makecdfenv' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating makecdfenv-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating makecdfenv-manual.tex ... OK
* checking makecdfenv-manual.tex ... OK

makecdfenv.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.2-bioc/meat/makecdfenv.Rcheck


---------- Making package makecdfenv ------------

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************

  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making read_cdffile.d from read_cdffile.c
gcc  -std=gnu99 -Id:/biocbld/bbs-2.2-bioc/R/src/extra/zlib -DHAVE_ZLIB -Id:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c read_cdffile.c -o read_cdffile.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.2-bioc/R/include  -i makecdfenv_res.rc -o makecdfenv_res.o
gcc  -std=gnu99  -shared -s  -o makecdfenv.dll makecdfenv.def read_cdffile.o makecdfenv_res.o  -Ld:/biocbld/bbs-2.2-bioc/R/bin -Ld:/biocbld/bbs-2.2-bioc/R/src/extra/zlib -lz   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  preparing package makecdfenv for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'makecdfenv'
     Formats: text html latex example chm 
  Cdf-class                         text    html    latex           chm
  getInfoInAffyFile                 text    html    latex           chm
  make.cdf.env                      text    html    latex   example chm
  make.cdf.package                  text    html    latex   example chm
  pmormm                            text    html    latex           chm
  read.cdffile                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.2-bioc\meat\makecdfenv.Rcheck\00_pkg_src\makecdfenv\chm\makecdfenv.chm


Compile time: 0 minutes, 0 seconds
7	Topics
42	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.2-bioc\meat\makecdfenv.Rcheck\00_pkg_src\makecdfenv\chm\makecdfenv.chm, 26,861 bytes
Compression decreased file by 7,466 bytes.
  adding MD5 sums

* DONE (makecdfenv)