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Package 112/251HostnameOS / ArchBUILDCHECKBUILD BIN
iSNetwork 1.9.0
Elizabeth Whalen
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/iSNetwork
Last Changed Rev: 28111 / Revision: 29143
Last Changed Date: 2007-10-21 09:23:03 -0700 (Sun, 21 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  WARNINGS 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
lemming Windows Server 2003 (32-bit) / x64 N O T   S U P P O R T E D
Package: iSNetwork
Version: 1.9.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check iSNetwork_1.9.0.tar.gz
StartedAt: 2007-12-11 06:39:38 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 06:45:07 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 328.6 seconds
RetCode: 0
Status: OK
CheckDir: iSNetwork.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/iSNetwork.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'iSNetwork/DESCRIPTION' ... OK
* this is package 'iSNetwork' version '1.9.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'iSNetwork' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
createChildModelView: no visible global function definition for
  ‘gtkComboGetList’
createChrLocGSEGUI : <anonymous>: no visible global function definition
  for ‘gtkCListGetRows’
createChrLocGSEGUI : <anonymous>: no visible global function definition
  for ‘gtkCListGetFocusRow’
createChrLocGSEGUI: no visible global function definition for
  ‘gtkComboGetList’
createColorBrowser: no visible global function definition for
  ‘gtkColorSelectionDialogGetOkButton’
createColorBrowser: no visible global function definition for
  ‘gtkColorSelectionDialogGetCancelButton’
createColorBrowser: no visible global function definition for
  ‘gtkColorSelectionDialogGetHelpButton’
createColorBrowser: no visible global function definition for
  ‘gtkColorSelectionDialogGetColorsel’
createGoGraphGUI : <anonymous>: no visible global function definition
  for ‘gtkCListGetRows’
createGoGraphGUI : <anonymous>: no visible global function definition
  for ‘gtkCListGetFocusRow’
createGoGraphGUI: no visible global function definition for
  ‘gtkComboGetList’
createKEGGGSEGUI : <anonymous>: no visible global function definition
  for ‘gtkCListGetRows’
createKEGGGSEGUI : <anonymous>: no visible global function definition
  for ‘gtkCListGetFocusRow’
createKEGGGSEGUI: no visible global function definition for
  ‘gtkComboGetList’
createKeyPressEvent : <anonymous>: no visible global function
  definition for ‘gdkEventKeyGetString’
createKeyPressEvent : <anonymous>: no visible global function
  definition for ‘gdkEventKeyGetState’
createKeyPressEvent : <anonymous>: no visible global function
  definition for ‘gdkEventKeyGetKeyval’
createMDSCluster: no visible global function definition for
  ‘gtkComboGetList’
createSubsetGUI: no visible global function definition for
  ‘gtkComboGetList’
setLoadModelView: no visible global function definition for
  ‘gtkComboGetList’
setLoadModelView : <anonymous>: no visible global function definition
  for ‘gtkCListGetFocusRow’
showHiddenView : <anonymous>: no visible global function definition for
  ‘gtkCListGetRows’
showHiddenView : <anonymous>: no visible global function definition for
  ‘gtkCListGetFocusRow’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating iSNetwork-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './iSNetwork.tex' ...
Package natbib Warning: Citation `GGobi' on page 1 undefined on input line 83.
Package natbib Warning: Citation `Lisp' on page 1 undefined on input line 85.
Package natbib Warning: Citation `GGobiMan' on page 1 undefined on input line 8
Package natbib Warning: Citation `DesignPatterns' on page 1 undefined on input 
Package natbib Warning: Citation `GSE' on page 4 undefined on input line 245.
Package natbib Warning: Citation `paper2' on page 10 undefined on input line 56
Package natbib Warning: Citation `paper3' on page 10 undefined on input line 56
Package natbib Warning: Citation `paper2' on page 12 undefined on input line 68
Package natbib Warning: Citation `paper3' on page 12 undefined on input line 68
Package natbib Warning: Citation `paper3' on page 13 undefined on input line 78
Package natbib Warning: Citation `paper3' on page 14 undefined on input line 83
Package natbib Warning: Citation `paper3' on page 15 undefined on input line 87
Package natbib Warning: Citation `paper3' on page 15 undefined on input line 90
Package natbib Warning: Citation `GrLayout' on page 21 undefined on input line 
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './iSNetwork.tex' ...
Package natbib Warning: Citation `GGobi' on page 1 undefined on input line 83.
Package natbib Warning: Citation `Lisp' on page 1 undefined on input line 85.
Package natbib Warning: Citation `GGobiMan' on page 1 undefined on input line 8
Package natbib Warning: Citation `DesignPatterns' on page 1 undefined on input 
Package natbib Warning: Citation `GSE' on page 4 undefined on input line 245.
Package natbib Warning: Citation `paper2' on page 10 undefined on input line 56
Package natbib Warning: Citation `paper3' on page 10 undefined on input line 56
Package natbib Warning: Citation `paper2' on page 12 undefined on input line 68
Package natbib Warning: Citation `paper3' on page 12 undefined on input line 68
Package natbib Warning: Citation `paper3' on page 13 undefined on input line 78
Package natbib Warning: Citation `paper3' on page 14 undefined on input line 83
Package natbib Warning: Citation `paper3' on page 15 undefined on input line 87
Package natbib Warning: Citation `paper3' on page 15 undefined on input line 90
Package natbib Warning: Citation `GrLayout' on page 21 undefined on input line 
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './iSNetwork.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './iSNetwork.tex' ...
* creating iSNetwork-manual.tex ... OK
* checking iSNetwork-manual.tex ... OK

iSNetwork.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/iSNetwork.Rcheck
* Installing *source* package 'iSNetwork' ...
** R
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: RGtk
Loading required package: gtkDevice
Loading required package: BioMVCClass
Loading required package: MVCClass
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable

Attaching package: 'annotate'


	The following object(s) are masked from package:Rgraphviz :

	 toFile 

** help
Note: removing empty section \examples
Note: removing empty section \examples
 >>> Building/Updating help pages for package 'iSNetwork'
     Formats: text html latex example 
  addCBFunction                     text    html    latex   example
  addMenuItem                       text    html    latex   example
  addNewChildMethod                 text    html    latex   example
  addToKeyVals                      text    html    latex   example
  clickEvent-methods                text    html    latex
  createChrLocGSE                   text    html    latex   example
  createControlWindow               text    html    latex   example
  createGoGraph                     text    html    latex   example
  createGraphPlot                   text    html    latex   example
  createHeatmap                     text    html    latex   example
  createKEGGGSE                     text    html    latex   example
  createModelGraph                  text    html    latex   example
  createQQplot                      text    html    latex   example
  createSPlot                       text    html    latex   example
  createSpreadsheet                 text    html    latex   example
  createSubset                      text    html    latex   example
  deleteMVC                         text    html    latex   example
  getActiveMVC                      text    html    latex   example
  getColor                          text    html    latex   example
  getData                           text    html    latex   example
  getHiddenValues                   text    html    latex   example
  getKeyVals                        text    html    latex   example
  getMVCFromWinNum                  text    html    latex   example
  getMVCList                        text    html    latex   example
  getMethodsToCreateChild           text    html    latex   example
  getModelNames                     text    html    latex   example
  getModelVar                       text    html    latex   example
  getNodeAttr                       text    html    latex   example
  getTooltips                       text    html    latex   example
  handleMessage-methods             text    html    latex
  heatmapNI                         text    html    latex   example
  identifyView-methods              text    html    latex
  initialize-methods                text    html    latex
  loadData                          text    html    latex   example
  loadModel                         text    html    latex
  loadModelVar                      text    html    latex   example
  motionEvent-methods               text    html    latex
  performMDS                        text    html    latex   example
  plotModelGraph                    text    html    latex   example
  provideInfo-methods               text    html    latex
  quitiSNetwork                     text    html    latex   example
  removeKeyVals                     text    html    latex   example
  resetWinSize                      text    html    latex   example
  setActiveMVC                      text    html    latex   example
  setCallFunc                       text    html    latex   example
  setChipType                       text    html    latex   example
  setColor                          text    html    latex   example
  setModelName                      text    html    latex   example
  setToggleX                        text    html    latex
  setTooltips                       text    html    latex   example
  showHiddenValues                  text    html    latex   example
  updateModel-methods               text    html    latex
  updateView-methods                text    html    latex
** building package indices ...
* DONE (iSNetwork)