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Package 77/251HostnameOS / ArchBUILDCHECKBUILD BIN
flowViz 1.3.2
Florian Hahne
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowViz
Last Changed Rev: 29141 / Revision: 29143
Last Changed Date: 2007-12-10 20:29:49 -0800 (Mon, 10 Dec 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: flowViz
Version: 1.3.2
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check flowViz_1.3.2.tar.gz
StartedAt: 2007-12-11 06:00:47 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 06:15:43 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 896.5 seconds
RetCode: 0
Status: OK
CheckDir: flowViz.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/flowViz.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'flowViz/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowViz' version '1.3.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowViz' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating flowViz-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './filters.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './filters.tex' ...
* creating flowViz-manual.tex ... OK
* checking flowViz-manual.tex ... OK

flowViz.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/flowViz.Rcheck
* Installing *source* package 'flowViz' ...
** R
** inst
** preparing package for lazy loading
Loading required package: flowCore
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Scalable Robust Estimators with High Breakdown Point (version 0.4-03)

Attaching package: 'rrcov'


	The following object(s) are masked from package:stats :

	 biplot,
	 predict,
	 screeplot 

Loading required package: feature
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: misc3d
Loading required package: rgl

Attaching package: 'flowCore'


	The following object(s) are masked from package:stats :

	 filter 

Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: lattice
Loading required package: MASS
Loading required package: RColorBrewer
Creating a new generic function for "ecdfplot" in "flowViz"
Creating a new generic function for "densityplot" in "flowViz"
Creating a new generic function for "levelplot" in "flowViz"
Creating a new generic function for "qqmath" in "flowViz"
Creating a new generic function for "splom" in "flowViz"
Creating a new generic function for "parallel" in "flowViz"
Warning in matchSignature(signature, fdef, where) :
  in the method signature for function "filterBoundary" no definition for class: "curv2Gate"
Creating a new generic function for "xyplot" in "flowViz"
** help
 >>> Building/Updating help pages for package 'flowViz'
     Formats: text html latex example 
  ecdfplot                          text    html    latex   example
  flowPlot                          text    html    latex   example
  flowViz-package                   text    html    latex   example
  latticeMethods-flowSet            text    html    latex   example
  timeLinePlot                      text    html    latex   example
  xyplot                            text    html    latex   example
** building package indices ...
* DONE (flowViz)