Package: flowUtils

Version: 0.5.0

Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check flowUtils_0.5.0.tar.gz

StartedAt: 2007-12-11 03:31:12 -0800 (Tue, 11 Dec 2007)

EndedAt: 2007-12-11 03:31:55 -0800 (Tue, 11 Dec 2007)

EllapsedTime: 43.5 seconds

RetCode: 0

Status: WARNINGS

CheckDir: flowUtils.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.2-bioc/meat/flowUtils.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-18 r43497)
* checking for file 'flowUtils/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowUtils' version '0.5.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowUtils' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
parse.gatingML.http...www.isac.net.org.std.Gating.ML.v1.3._Gating.ML :
  makeCall: possible error in as.symbol("&", LESS, LT): unused
  argument(s) (LESS, LT)
parse.gatingML.http...www.isac.net.org.std.Gating.ML.v1.3._Gating.ML :
  makeCall: possible error in as.call(as.symbol("&"), MORE, GTE):
  unused argument(s) (MORE, GTE)
xmlToClass : <anonymous>: no visible binding for global variable
  'params'
xmlToFUN : <anonymous>: no visible binding for global variable 'params'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  read.compensationML
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating flowUtils-Ex.R ... OK
* checking examples ... OK
* creating flowUtils-manual.tex ... OK
* checking flowUtils-manual.tex ... OK

WARNING: There was 1 warning, see
  /home/biocbuild/bbs-2.2-bioc/meat/flowUtils.Rcheck/00check.log
for details

* Installing *source* package 'flowUtils' ...
** R
** inst
** help
 >>> Building/Updating help pages for package 'flowUtils'
     Formats: text html latex example 
  flowUtil-package                  text    html    latex   example
  read.gatingML                     text    html    latex   example
  read.transformML                  text    html    latex   example
** building package indices ...
* DONE (flowUtils)