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Package 70/251HostnameOS / ArchBUILDCHECKBUILD BIN
externalVector 1.5.2
Biocore Team c/o BioC user list
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/externalVector
Last Changed Rev: 26527 / Revision: 29143
Last Changed Date: 2007-08-20 09:33:20 -0700 (Mon, 20 Aug 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  ERROR 
wilson2 Linux (openSUSE 10.3) / x86_64  OK [ ERROR ]
wellington Linux (openSUSE 10.3) / i686  OK  ERROR 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  ERROR  ERROR 
lemming Windows Server 2003 (32-bit) / x64  OK  ERROR  ERROR 
Package: externalVector
Version: 1.5.2
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check externalVector_1.5.2.tar.gz
StartedAt: 2007-12-11 03:30:42 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 03:30:49 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 7.5 seconds
RetCode: 1
Status: ERROR
CheckDir: externalVector.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/externalVector.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'externalVector/DESCRIPTION' ... OK
* this is package 'externalVector' version '1.5.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'externalVector' can be installed ... ERROR
Installation failed.
See '/loc/home/biocbuild/bbs-2.2-bioc/meat/externalVector.Rcheck/00install.out' for details.

externalVector.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/externalVector.Rcheck
* Installing *source* package 'externalVector' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c allocator.c -o allocator.o
allocator.c: In function ‘gcExternalPtr_new’:
allocator.c:32: warning: passing argument 1 of ‘R_MakeExternalPtr’ discards qualifiers from pointer target type
allocator.c:44: warning: passing argument 1 of ‘R_MakeExternalPtr’ discards qualifiers from pointer target type
allocator.c: In function ‘gcExternalPtr_restore’:
allocator.c:76: warning: passing argument 2 of ‘R_SetExternalPtrAddr’ discards qualifiers from pointer target type
allocator.c: In function ‘gcExternalPtr_resizeInternal’:
allocator.c:100: warning: passing argument 2 of ‘R_SetExternalPtrAddr’ discards qualifiers from pointer target type
allocator.c:136: warning: passing argument 1 of ‘memcpy’ discards qualifiers from pointer target type
allocator.c:141: warning: passing argument 2 of ‘R_SetExternalPtrAddr’ discards qualifiers from pointer target type
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c arraySummary.c -o arraySummary.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c coerce.c -o coerce.o
coerce.c: In function ‘ComplexFromString’:
coerce.c:213: warning: initialization discards qualifiers from pointer target type
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c externalVector.c -o externalVector.o
externalVector.c:7: warning: ‘ScalarVector’ defined but not used
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c groups.c -o groups.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c math.c -o math.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c slice.c -o slice.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c storage.c -o storage.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c subscript.c -o subscript.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o externalVector.so allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o   -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** preparing package for lazy loading
Creating a new generic function for "match" in "externalVector"
Creating a new generic function for "as.vector" in "externalVector"
Creating a new generic function for "as.single" in "externalVector"
Creating a new generic function for "as.list" in "externalVector"
Creating a new generic function for "as.matrix" in "externalVector"
Creating a new generic function for "as.data.frame" in "externalVector"
Error in match.call(fmatch, fcall) : 
  unused argument(s) (base = "indirectExternalVector")
Error: unable to load R code in package 'externalVector'
Execution halted
ERROR: lazy loading failed for package 'externalVector'
** Removing '/loc/home/biocbuild/bbs-2.2-bioc/meat/externalVector.Rcheck/externalVector'