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Package 70/251HostnameOS / ArchBUILDCHECKBUILD BIN
externalVector 1.5.2
Biocore Team c/o BioC user list
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/externalVector
Last Changed Rev: 26527 / Revision: 29143
Last Changed Date: 2007-08-20 09:33:20 -0700 (Mon, 20 Aug 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  ERROR 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  ERROR 
wellington Linux (openSUSE 10.3) / i686  OK  ERROR 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  ERROR  ERROR 
lemming Windows Server 2003 (32-bit) / x64  OK [ ERROR ] ERROR 
Package: externalVector
Version: 1.5.2
Command: D:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check externalVector_1.5.2.tar.gz
StartedAt: 2007-12-11 06:03:04 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 06:03:39 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 35.5 seconds
RetCode: 1
Status: ERROR
CheckDir: externalVector.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.2-bioc/meat/externalVector.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'externalVector/DESCRIPTION' ... OK
* this is package 'externalVector' version '1.5.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'externalVector' can be installed ... WARNING
Found the following significant warnings:
  allocator.c:32: warning: passing argument 1 of 'R_MakeExternalPtr' discards qualifiers from pointer target type
  allocator.c:44: warning: passing argument 1 of 'R_MakeExternalPtr' discards qualifiers from pointer target type
  allocator.c:76: warning: passing argument 2 of 'R_SetExternalPtrAddr' discards qualifiers from pointer target type
  allocator.c:100: warning: passing argument 2 of 'R_SetExternalPtrAddr' discards qualifiers from pointer target type
  allocator.c:136: warning: passing argument 1 of 'memcpy' discards qualifiers from pointer target type
  allocator.c:141: warning: passing argument 2 of 'R_SetExternalPtrAddr' discards qualifiers from pointer target type
  coerce.c:213: warning: initialization discards qualifiers from pointer target type
See 'D:/biocbld/bbs-2.2-bioc/meat/externalVector.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... ERROR
Error in library(externalVector) : 
  there is no package called 'externalVector'
Execution halted

It looks like this package has a loading problem: see the messages for
details.

externalVector.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.2-bioc/meat/externalVector.Rcheck


---------- Making package externalVector ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making allocator.d from allocator.c
making arraySummary.d from arraySummary.c
making coerce.d from coerce.c
making externalVector.d from externalVector.c
making groups.d from groups.c
making math.d from math.c
making slice.d from slice.c
making storage.d from storage.c
making subscript.d from subscript.c
gcc  -std=gnu99  -Id:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c allocator.c -o allocator.o
allocator.c: In function 'gcExternalPtr_new':
allocator.c:32: warning: passing argument 1 of 'R_MakeExternalPtr' discards qualifiers from pointer target type
allocator.c:44: warning: passing argument 1 of 'R_MakeExternalPtr' discards qualifiers from pointer target type
allocator.c: In function 'gcExternalPtr_restore':
allocator.c:76: warning: passing argument 2 of 'R_SetExternalPtrAddr' discards qualifiers from pointer target type
allocator.c: In function 'gcExternalPtr_resizeInternal':
allocator.c:100: warning: passing argument 2 of 'R_SetExternalPtrAddr' discards qualifiers from pointer target type
allocator.c:136: warning: passing argument 1 of 'memcpy' discards qualifiers from pointer target type
allocator.c:141: warning: passing argument 2 of 'R_SetExternalPtrAddr' discards qualifiers from pointer target type
gcc  -std=gnu99  -Id:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c arraySummary.c -o arraySummary.o
gcc  -std=gnu99  -Id:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c coerce.c -o coerce.o
coerce.c: In function 'ComplexFromString':
coerce.c:213: warning: initialization discards qualifiers from pointer target type
gcc  -std=gnu99  -Id:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc  -std=gnu99  -Id:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c groups.c -o groups.o
gcc  -std=gnu99  -Id:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c math.c -o math.o
gcc  -std=gnu99  -Id:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c slice.c -o slice.o
gcc  -std=gnu99  -Id:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c storage.c -o storage.o
gcc  -std=gnu99  -Id:/biocbld/bbs-2.2-bioc/R/include     -O3 -Wall  -c subscript.c -o subscript.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I d:/biocbld/bbs-2.2-bioc/R/include  -i externalVector_res.rc -o externalVector_res.o
gcc  -std=gnu99  -shared -s  -o externalVector.dll externalVector.def allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o externalVector_res.o  -Ld:/biocbld/bbs-2.2-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  preparing package externalVector for lazy loading
Creating a new generic function for "match" in "externalVector"
Creating a new generic function for "as.vector" in "externalVector"
Creating a new generic function for "as.single" in "externalVector"
Creating a new generic function for "as.list" in "externalVector"
Creating a new generic function for "as.matrix" in "externalVector"
Creating a new generic function for "as.data.frame" in "externalVector"
Error in match.call(fmatch, fcall) : 
  unused argument(s) (base = "indirectExternalVector")
Error: unable to load R code in package 'externalVector'
Execution halted
make[2]: *** [lazyload] Error 1
make[1]: *** [all] Error 2
make: *** [pkg-externalVector] Error 2
*** Installation of externalVector failed ***

Removing 'D:/biocbld/bbs-2.2-bioc/meat/externalVector.Rcheck/externalVector'