codelink 1.7.1
Diego Diez
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/codelink | | Last Changed Rev: 27861 / Revision: 29143 | | Last Changed Date: 2007-10-08 23:24:41 -0700 (Mon, 08 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | WARNINGS | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | WARNINGS | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | [ WARNINGS ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | WARNINGS | OK |
* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/codelink.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'codelink/DESCRIPTION' ... OK
* this is package 'codelink' version '1.7.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'codelink' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
Rd files without 'description':
createWeights.Rd
writeCodelink.Rd
These entries are required in an Rd file.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating codelink-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './codelink.tex' ...
LaTeX Warning: Citation `r' on page 1 undefined on input line 38.
LaTeX Warning: Citation `BIOC' on page 1 undefined on input line 39.
LaTeX Warning: Citation `limma' on page 5 undefined on input line 275.
LaTeX Warning: Citation `affy' on page 5 undefined on input line 290.
LaTeX Warning: Citation `limma' on page 8 undefined on input line 380.
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './codelink.tex' ...
LaTeX Warning: Citation `r' on page 1 undefined on input line 38.
LaTeX Warning: Citation `BIOC' on page 1 undefined on input line 39.
LaTeX Warning: Citation `limma' on page 5 undefined on input line 275.
LaTeX Warning: Citation `affy' on page 5 undefined on input line 290.
LaTeX Warning: Citation `limma' on page 8 undefined on input line 380.
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './codelink.tex' ...
* creating codelink-manual.tex ... OK
* checking codelink-manual.tex ... OK
WARNING: There was 1 warning, see
/loc/home/biocbuild/bbs-2.2-bioc/meat/codelink.Rcheck/00check.log
for details
/loc/home/biocbuild/bbs-2.2-bioc/meat/codelink.Rcheck
* Installing *source* package 'codelink' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: limma
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
** help
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>>> Building/Updating help pages for package 'codelink'
Formats: text html latex example
Codelink-class text html latex example
Nondocumented-objects text html latex
SNR text html latex
arrayNew text html latex example
arraySize text html latex
as.matrix.Codelink text html latex example
bkgdCorrect text html latex example
codelink.example text html latex
createWeights text html latex example
cutCV text html latex example
decDetect text html latex
dim.Codelink text html latex example
fc2Cond text html latex
imageCodelink text html latex example
logCodelink text html latex example
mergeArray text html latex example
na2false text html latex example
normalize text html latex example
normalize.loess text html latex example
plotCV text html latex
plotCorrelation text html latex example
plotDensities text html latex example
plotMA text html latex example
printHead text html latex
readCodelink text html latex example
readHeader text html latex example
readHeaderXLS text html latex example
reportCodelink text html latex
selCV text html latex
writeCodelink text html latex example
** building package indices ...
* DONE (codelink)