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Package 12/251HostnameOS / ArchBUILDCHECKBUILD BIN
affypdnn 1.13.2
Laurent Gautier
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affypdnn
Last Changed Rev: 28605 / Revision: 29143
Last Changed Date: 2007-11-08 22:33:01 -0800 (Thu, 08 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK  TIMEOUT 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ TIMEOUT ] OK 
Package: affypdnn
Version: 1.13.2
Command: D:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check affypdnn_1.13.2.tar.gz
StartedAt: 2007-12-11 04:51:55 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 05:32:00 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 2400.2 seconds
RetCode: None
Status: TIMEOUT
CheckDir: affypdnn.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.2-bioc/meat/affypdnn.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'affypdnn/DESCRIPTION' ... OK
* this is package 'affypdnn' version '1.13.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affypdnn' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'transform.ProbeSet':
  transform.ProbeSet

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating affypdnn-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ...

affypdnn.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.2-bioc/meat/affypdnn.Rcheck


---------- Making package affypdnn ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'affypdnn'
     Formats: text html latex example chm 
  chiptype.pdnn.params              text    html    latex   example chm
  expressopdnn                      text    html    latex   example chm
  find.params.pdnn                  text    html    latex   example chm
  generateExprVal.method.pdnn       text    html    latex   example chm
  matplotProbesPDNN                 text    html    latex   example chm
  pdnn.params.chiptype              text    html    latex   example chm
  transform.ProbeSet                text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.2-bioc\meat\affypdnn.Rcheck\00_pkg_src\affypdnn\chm\affypdnn.chm


Compile time: 0 minutes, 0 seconds
8	Topics
31	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.2-bioc\meat\affypdnn.Rcheck\00_pkg_src\affypdnn\chm\affypdnn.chm, 27,599 bytes
Compression decreased file by 8,298 bytes.
  adding MD5 sums

* DONE (affypdnn)