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Package 215/251HostnameOS / ArchBUILDCHECKBUILD BIN
SBMLR 1.33.0
Tomas Radivoyevitch
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SBMLR
Last Changed Rev: 28474 / Revision: 29143
Last Changed Date: 2007-11-05 11:51:11 -0800 (Mon, 05 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  ERROR 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  ERROR 
wellington Linux (openSUSE 10.3) / i686  OK  ERROR 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  ERROR  OK 
lemming Windows Server 2003 (32-bit) / x64  OK [ ERROR ] OK 
Package: SBMLR
Version: 1.33.0
Command: D:\biocbld\bbs-2.2-bioc\R\bin\R.exe CMD check SBMLR_1.33.0.tar.gz
StartedAt: 2007-12-11 08:13:38 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 08:14:59 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 80.7 seconds
RetCode: 1
Status: ERROR
CheckDir: SBMLR.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.2-bioc/meat/SBMLR.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'SBMLR/DESCRIPTION' ... OK
* this is package 'SBMLR' version '1.33.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SBMLR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating SBMLR-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'SBMLR-Ex.R' failed.
The error most likely occurred in:

> ### * saveSBMLR
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: saveSBMLR
> ### Title: Save an R model object of class SBML as an SBMLR file
> ### Aliases: saveSBMLR
> ### Keywords: arith math
> 
> ### ** Examples
> 
> library(SBMLR)
> library(odesolve)
> curto=readSBMLR(file.path(system.file(package="SBMLR"), "models/curto.r"))  
> saveSBMLR(curto,file.path(system.file(package="SBMLR"), "models/curtoR.r"))  
Error in sprintf("list( id=\"%s\", reversible=%s,", reactions[[i]][["id"]],  : 
  zero-length argument
Calls: saveSBMLR -> cat -> sprintf
Execution halted

SBMLR.Rcheck/00install.out:

installing R.css in D:/biocbld/bbs-2.2-bioc/meat/SBMLR.Rcheck


---------- Making package SBMLR ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  preparing package SBMLR for lazy loading
Loading required package: XML
Loading required package: odesolve
  installing man source files
  installing indices
  installing help
Note: removing empty section \details
Note: removing empty section \details
 >>> Building/Updating help pages for package 'SBMLR'
     Formats: text html latex example chm 
  equateModels                      text    html    latex   example chm
  makeLaw                           text    html    latex   example chm
  readSBML                          text    html    latex   example chm
  readSBMLR                         text    html    latex   example chm
  saveSBML                          text    html    latex   example chm
  saveSBMLR                         text    html    latex   example chm
  simulate                          text    html    latex   example chm
  summary.SBML                      text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.2-bioc\meat\SBMLR.Rcheck\00_pkg_src\SBMLR\chm\SBMLR.chm


Compile time: 0 minutes, 0 seconds
9	Topics
22	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.2-bioc\meat\SBMLR.Rcheck\00_pkg_src\SBMLR\chm\SBMLR.chm, 25,220 bytes
Compression decreased file by 3,897 bytes.
  adding MD5 sums

* DONE (SBMLR)