Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

Package 186/251HostnameOS / ArchBUILDCHECKBUILD BIN
RbcBook1 1.7.0
Vince Carey
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RbcBook1
Last Changed Rev: 27716 / Revision: 29143
Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  ERROR 
wilson2 Linux (openSUSE 10.3) / x86_64  OK [ ERROR ]
wellington Linux (openSUSE 10.3) / i686  OK  ERROR 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  ERROR  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  ERROR  OK 
Package: RbcBook1
Version: 1.7.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check RbcBook1_1.7.0.tar.gz
StartedAt: 2007-12-11 04:39:17 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 04:39:38 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 21.5 seconds
RetCode: 1
Status: ERROR
CheckDir: RbcBook1.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/RbcBook1.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'RbcBook1/DESCRIPTION' ... OK
* this is package 'RbcBook1' version '1.7.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RbcBook1' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
remapAff: no visible binding for global variable
  ‘hgu95av2SYMBOL’
* checking Rd files ... WARNING
Rd files without 'description':
  rpart2gNEL.Rd
These entries are required in an Rd file.

See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating RbcBook1-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'RbcBook1-Ex.R' failed.
The error most likely occurred in:

> ### * rpart2gNEL
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: rpart2gNEL
> ### Title: convert an rpart object to a graphNEL instance
> ### Aliases: rpart2gNEL rpart2gNEL grabSplitV remapAff
> ### Keywords: models
> 
> ### ** Examples
> 
> library(rpart)
> example(rpart)

rpart> fit <- rpart(Kyphosis ~ Age + Number + Start, data=kyphosis)

rpart> fit2 <- rpart(Kyphosis ~ Age + Number + Start, data=kyphosis,
rpart+               parms=list(prior=c(.65,.35), split='information'))

rpart> fit3 <- rpart(Kyphosis ~ Age + Number + Start, data=kyphosis,
rpart+               control=rpart.control(cp=.05))

rpart> par(mfrow=c(1,2), xpd=NA) # otherwise on some devices the text is clipped

rpart> plot(fit)

rpart> text(fit, use.n=TRUE)

rpart> plot(fit2)

rpart> text(fit2, use.n=TRUE)
> ff = rpart2gNEL(fit2)
> ff
Warning: The edgemode slot is deprecated. Use 'updateGraph' to update this graph object.
Error in if (!isDirected(object)) { : argument is of length zero
Calls: <Anonymous> -> <Anonymous> -> numEdges -> numEdges
Execution halted

RbcBook1.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/RbcBook1.Rcheck
* Installing *source* package 'RbcBook1' ...
** R
** data
** inst
** help
Note: removing empty section \arguments
Note: removing empty section \description
 >>> Building/Updating help pages for package 'RbcBook1'
     Formats: text html latex example 
  bcStangle                         text    html    latex   example
  bcSweave                          text    html    latex   example
  bcr                               text    html    latex   example
  checkVerbatimLines                text    html    latex   example
  imageSize                         text    html    latex   example
  perf                              text    html    latex   example
  requireAllBook1                   text    html    latex   example
  rpart2gNEL                        text    html    latex   example
** building package indices ...
* DONE (RbcBook1)