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Package 169/251HostnameOS / ArchBUILDCHECKBUILD BIN
PGSEA 1.7.0
Karl Dykema
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/PGSEA
Last Changed Rev: 29102 / Revision: 29143
Last Changed Date: 2007-12-07 12:45:26 -0800 (Fri, 07 Dec 2007)
lamb1 Linux (SUSE 10.1) / x86_64  ERROR  skipped 
wilson2 Linux (openSUSE 10.3) / x86_64 [ ERROR ] skipped 
wellington Linux (openSUSE 10.3) / i686  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
lemming Windows Server 2003 (32-bit) / x64  ERROR  skipped  skipped 
Package: PGSEA
Version: 1.7.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build PGSEA
StartedAt: 2007-12-11 02:29:33 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 02:34:36 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 302.7 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'PGSEA/DESCRIPTION' ... OK
* preparing 'PGSEA':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
/tmp/Rinst300739486
* Installing *source* package 'PGSEA' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'PGSEA'
     Formats: text html latex example 
  GOLUBmcs                          text    html    latex   example
  PGSEA                             text    html    latex   example
  VAIgsc                            text    html    latex   example
  VAImcs                            text    html    latex   example
  aggregateExprs                    text    html    latex   example
  convertSmc                        text    html    latex   example
  editSmc                           text    html    latex   example
  go2smc                            text    html    latex   example
  kegg2smc                          text    html    latex   example
  nbEset                            text    html    latex   example
  readGmt                           text    html    latex   example
  readSmc                           text    html    latex   example
  scanSmc                           text    html    latex   example
  smcPlot                           text    html    latex   example
  writeGmt                          text    html    latex   example
  writeSmc                          text    html    latex   example
** building package indices ...
* DONE (PGSEA)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: Ruuid
Loading required package: RCurl
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: annotate
Loading required package: xtable
trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/by_series/GSE7023/GSE7023_family.soft.gz'
ftp data connection made, file length 8931675 bytes
opened URL
==================================================
downloaded 8.5 Mb


Error: processing vignette 'PGSEA2.Rnw' failed with diagnostics:
 chunk 10 
Error in readChar(con, 5) : cannot open the connection
In addition: Warning message:
In readChar(con, 5) : cannot open compressed file 'ABC.rda'
Execution halted