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Package 133/251HostnameOS / ArchBUILDCHECKBUILD BIN
MantelCorr 1.9.0
Brian Steinmeyer
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MantelCorr
Last Changed Rev: 28097 / Revision: 29143
Last Changed Date: 2007-10-21 09:02:13 -0700 (Sun, 21 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK [ OK ]
wellington Linux (openSUSE 10.3) / i686  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: MantelCorr
Version: 1.9.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check MantelCorr_1.9.0.tar.gz
StartedAt: 2007-12-11 04:04:22 -0700 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 04:05:01 -0700 (Tue, 11 Dec 2007)
EllapsedTime: 38.5 seconds
RetCode: 0
Status: OK
CheckDir: MantelCorr.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/MantelCorr.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'MantelCorr/DESCRIPTION' ... OK
* this is package 'MantelCorr' version '1.9.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MantelCorr' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating MantelCorr-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './MantelCorrVignette.tex' ...
LaTeX Warning: Citation `shannon05' on page 1 undefined on input line 48.
LaTeX Warning: Citation `shannon02' on page 1 undefined on input line 51.
LaTeX Warning: Citation `mantel67' on page 1 undefined on input line 60.
LaTeX Warning: Citation `golub99' on page 1 undefined on input line 71.
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './MantelCorrVignette.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './MantelCorrVignette.tex' ...
* creating MantelCorr-manual.tex ... OK
* checking MantelCorr-manual.tex ... OK

MantelCorr.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/MantelCorr.Rcheck
* Installing *source* package 'MantelCorr' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'MantelCorr'
     Formats: text html latex example 
  ClusterGeneList                   text    html    latex   example
  ClusterList                       text    html    latex   example
  DistMatrices                      text    html    latex   example
  GetClusters                       text    html    latex   example
  GolubTrain                        text    html    latex   example
  MantelCorrs                       text    html    latex   example
  PermutationTest                   text    html    latex   example
** building package indices ...
* DONE (MantelCorr)