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Package 84/251HostnameOS / ArchBUILDCHECKBUILD BIN
GeneR 2.9.0
Y. d'Aubenton-Carafa
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneR
Last Changed Rev: 28107 / Revision: 29143
Last Changed Date: 2007-10-21 09:09:38 -0700 (Sun, 21 Oct 2007)
lamb1 Linux (SUSE 10.1) / x86_64  ERROR  skipped 
wilson2 Linux (openSUSE 10.3) / x86_64  ERROR  skipped 
wellington Linux (openSUSE 10.3) / i686 [ ERROR ] skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
lemming Windows Server 2003 (32-bit) / x64  ERROR  skipped  skipped 
Package: GeneR
Version: 2.9.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build GeneR
StartedAt: 2007-12-11 03:20:07 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 03:20:26 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 18.9 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'GeneR/DESCRIPTION' ... OK
* preparing 'GeneR':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
/tmp/Rinst1499975189
* Installing *source* package 'GeneR' ...
** libs
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c complementaire.cc -o complementaire.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c compoSeq.cc -o compoSeq.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c dnaRna.cc -o dnaRna.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GeneR_glob.cc -o GeneR_glob.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c GeneR_seq.cc -o GeneR_seq.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c libIndex.cc -o libIndex.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c libStrings.cc -o libStrings.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c makeIndex.cc -o makeIndex.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c masked.cc -o masked.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c misc.cc -o misc.o
misc.cc: In function ‘SEXPREC* str_to_nbstr(SEXPREC*, SEXPREC*)’:
misc.cc:31: warning: ‘multiple’ may be used uninitialized in this function
misc.cc:30: warning: ‘ans’ may be used uninitialized in this function
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readEmblDescript.cc -o readEmblDescript.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readIndex.cc -o readIndex.o
g++ -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c readLocation.cc -o readLocation.o
readLocation.cc:26:26: error: readLocation.h: No such file or directory
make: *** [readLocation.o] Error 1
ERROR: compilation failed for package 'GeneR'
** Removing '/tmp/Rinst1499975189/GeneR'
 ERROR
Installation failed.
Removing '/tmp/Rinst1499975189'