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Package 92/251HostnameOS / ArchBUILDCHECKBUILD BIN
GEOquery 2.3.0
Sean Davis
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GEOquery
Last Changed Rev: 28557 / Revision: 29143
Last Changed Date: 2007-11-07 23:00:31 -0800 (Wed, 07 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  ERROR  OK 
Package: GEOquery
Version: 2.3.0
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check GEOquery_2.3.0.tar.gz
StartedAt: 2007-12-11 06:14:38 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 06:20:22 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 344.4 seconds
RetCode: 0
Status: OK
CheckDir: GEOquery.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/GEOquery.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'GEOquery/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GEOquery' version '2.3.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GEOquery' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating GEOquery-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './GEOquery.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './GEOquery.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './GEOquery.tex' ...
* creating GEOquery-manual.tex ... OK
* checking GEOquery-manual.tex ... OK

GEOquery.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/GEOquery.Rcheck
* Installing *source* package 'GEOquery' ...
** R
** inst
** help
Note: removing empty section \usage
Note: removing empty section \details
Note: removing empty section \arguments
 >>> Building/Updating help pages for package 'GEOquery'
     Formats: text html latex example 
  GDS-class                         text    html    latex
  GDS2MA                            text    html    latex   example
  GEOData-class                     text    html    latex
  GEODataTable-class                text    html    latex
  GPL-class                         text    html    latex
  GSE-class                         text    html    latex
  GSM-class                         text    html    latex
  dataTable                         text    html    latex
  getGEO                            text    html    latex   example
  getGEOfile                        text    html    latex   example
  gunzip                            text    html    latex
  parseGEO                          text    html    latex
** building package indices ...
* DONE (GEOquery)