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Package 62/251HostnameOS / ArchBUILDCHECKBUILD BIN
DNAcopy 1.13.2
Venkatraman E. Seshan
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/DNAcopy
Last Changed Rev: 28980 / Revision: 29143
Last Changed Date: 2007-11-30 07:57:12 -0800 (Fri, 30 Nov 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: DNAcopy
Version: 1.13.2
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD build DNAcopy
StartedAt: 2007-12-11 03:27:52 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 03:28:18 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 26.3 seconds
RetCode: 0
Status: OK
PackageFile: DNAcopy_1.13.2.tar.gz
PackageFileSize: 242.7 KiB

Command output

* checking for file 'DNAcopy/DESCRIPTION' ... OK
* preparing 'DNAcopy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
/tmp/Rinst2541430563
* Installing *source* package 'DNAcopy' ...
** libs
gfortran   -fpic  -g -O2 -Wall -c changepoints.f -o changepoints.o
changepoints.f: In function ‘tmax1’:
changepoints.f:163: warning: ‘tmaxi’ may be used uninitialized in this function
changepoints.f:163: warning: ‘tmaxj’ may be used uninitialized in this function
changepoints.f:163: warning: ‘sxmxi’ may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran   -fpic  -g -O2 -Wall -c getbdry.f -o getbdry.o
gfortran   -fpic  -g -O2 -Wall -c hybcpt.f -o hybcpt.o
gfortran   -fpic  -g -O2 -Wall -c prune.f -o prune.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c rshared.c -o rshared.o
gfortran   -fpic  -g -O2 -Wall -c segmentp.f -o segmentp.o
gcc -std=gnu99 -shared -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o segmentp.o  -lgfortran -lm -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
**  moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'DNAcopy'
     Formats: text html latex example 
  CNA                               text    html    latex   example
  DNAcopy-internal                  text    html    latex
  DNAcopy                           text    html    latex
  coriell                           text    html    latex
  cytoBand                          text    html    latex
  getbdry                           text    html    latex
  plot.DNAcopy                      text    html    latex   example
  segment                           text    html    latex   example
  segments.p                        text    html    latex   example
  smooth.CNA                        text    html    latex   example
  subset.CNA                        text    html    latex   example
  subset.DNAcopy                    text    html    latex
** building package indices ...
* DONE (DNAcopy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'DNAcopy_1.13.2.tar.gz'