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Package 48/251HostnameOS / ArchBUILDCHECKBUILD BIN
CGHcall 1.1.9
Sjoerd Vosse
Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CGHcall
Last Changed Rev: 29011 / Revision: 29143
Last Changed Date: 2007-12-04 03:09:56 -0800 (Tue, 04 Dec 2007)
lamb1 Linux (SUSE 10.1) / x86_64  OK  OK 
wilson2 Linux (openSUSE 10.3) / x86_64  OK  OK 
wellington Linux (openSUSE 10.3) / i686  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
lemming Windows Server 2003 (32-bit) / x64  OK  OK  OK 
Package: CGHcall
Version: 1.1.9
Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check CGHcall_1.1.9.tar.gz
StartedAt: 2007-12-11 05:36:06 -0800 (Tue, 11 Dec 2007)
EndedAt: 2007-12-11 05:47:06 -0800 (Tue, 11 Dec 2007)
EllapsedTime: 659.8 seconds
RetCode: 0
Status: OK
CheckDir: CGHcall.Rcheck
Warnings: 0

Command output

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/CGHcall.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-09 r43632)
* checking for file 'CGHcall/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CGHcall' version '1.1.9'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CGHcall' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating CGHcall-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './CGHcall.tex' ...
Package natbib Warning: Citation `CGHcall' on page 1 undefined on input line 40
Package natbib Warning: Citation `Wilting' on page 1 undefined on input line 40
Package natbib Warning: Citation `Impute' on page 2 undefined on input line 60.
Package natbib Warning: Citation `DNAcopy' on page 2 undefined on input line 81
Package natbib Warning: Citation `CGHcall' on page 2 undefined on input line 81
Package natbib Warning: Citation `DNAcopy' on page 2 undefined on input line 10
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './CGHcall.tex' ...
Package natbib Warning: Citation `CGHcall' on page 1 undefined on input line 40
Package natbib Warning: Citation `Wilting' on page 1 undefined on input line 40
Package natbib Warning: Citation `Impute' on page 2 undefined on input line 60.
Package natbib Warning: Citation `DNAcopy' on page 2 undefined on input line 81
Package natbib Warning: Citation `CGHcall' on page 2 undefined on input line 81
Package natbib Warning: Citation `DNAcopy' on page 3 undefined on input line 10
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './CGHcall.tex' ...
* creating CGHcall-manual.tex ... OK
* checking CGHcall-manual.tex ... OK

CGHcall.Rcheck/00install.out:

/loc/home/biocbuild/bbs-2.2-bioc/meat/CGHcall.Rcheck
* Installing *source* package 'CGHcall' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: impute
Loading required package: DNAcopy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
 >>> Building/Updating help pages for package 'CGHcall'
     Formats: text html latex example 
  CGHcall-package                   text    html    latex
  CGHcall                           text    html    latex   example
  Wilting                           text    html    latex
  chromosomes                       text    html    latex
  class.cghCall                     text    html    latex   example
  class.cghRaw                      text    html    latex   example
  class.cghSeg                      text    html    latex   example
  copynumber                        text    html    latex
  make_cghRaw                       text    html    latex   example
  normalize                         text    html    latex   example
  plot.summary                      text    html    latex   example
  preprocess                        text    html    latex   example
  probloss                          text    html    latex
  segmentData                       text    html    latex   example
** building package indices ...
* DONE (CGHcall)