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BioC experimental data: CHECK report for miRNATarget on petty

This page was generated on 2014-10-04 17:43:22 -0700 (Sat, 04 Oct 2014).

Package 134/197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRNATarget 1.2.0
Y-h. Taguchi
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/miRNATarget
Last Changed Rev: 2799 / Revision: 3055
Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ OK ] OK 

Summary

Package: miRNATarget
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch miRNATarget_1.2.0.tar.gz
StartedAt: 2014-10-04 09:28:53 -0700 (Sat, 04 Oct 2014)
EndedAt: 2014-10-04 09:30:15 -0700 (Sat, 04 Oct 2014)
EllapsedTime: 81.4 seconds
RetCode: 0
Status:  OK 
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch miRNATarget_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-2.14-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... [3s/9s] OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [20s/22s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/Users/biocbuild/bbs-2.14-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

miRNATarget.Rcheck/00install.out:

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

miRNATarget.Rcheck/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.0290.0030.031
HS_refseq_to_affy_hc_g1100.0100.0010.010
HS_refseq_to_affy_hg_focus0.0290.0010.030
HS_refseq_to_affy_hg_u133_plus_20.0890.0030.093
HS_refseq_to_affy_hg_u133a0.0590.0020.061
HS_refseq_to_affy_hg_u133a_20.0580.0010.058
HS_refseq_to_affy_hg_u133b0.0310.0010.032
HS_refseq_to_affy_hg_u95a0.0350.0010.036
HS_refseq_to_affy_hg_u95av20.0340.0010.035
HS_refseq_to_affy_hg_u95b0.0240.0010.025
HS_refseq_to_affy_hg_u95c0.0170.0010.017
HS_refseq_to_affy_hg_u95d0.0120.0010.014
HS_refseq_to_affy_hg_u95e0.0160.0000.017
HS_refseq_to_affy_huex_1_0_st_v22.1540.0442.199
HS_refseq_to_affy_hugene_1_0_st_v10.0720.0020.074
HS_refseq_to_affy_hugenefl0.0220.0010.023
HS_refseq_to_affy_u133_x3p0.1510.0030.153
HS_refseq_to_agilent_cgh_44b0.0200.0000.021
HS_refseq_to_agilent_wholegenome0.2420.0140.256
HS_refseq_to_canonical_transcript_stable_id0.0900.0120.102
HS_refseq_to_ccds0.0520.0020.054
HS_refseq_to_codelink0.0510.0020.053
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0060.0010.007
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0040.0010.005
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0040.0010.005
HS_refseq_to_embl0.9450.0190.964
HS_refseq_to_ensembl_exon_id0.0040.0000.004
HS_refseq_to_ensembl_gene_id0.0750.0000.075
HS_refseq_to_ensembl_peptide_id0.0710.0010.072
HS_refseq_to_ensembl_transcript_id0.2090.0060.214
HS_refseq_to_entrezgene0.0760.0010.077
HS_refseq_to_hgnc_id0.0710.0000.071
HS_refseq_to_hgnc_symbol0.0770.0010.078
HS_refseq_to_hgnc_transcript_name0.0760.0020.078
HS_refseq_to_illumina_humanht_120.0800.0020.082
HS_refseq_to_illumina_humanwg_6_v10.0690.0010.070
HS_refseq_to_illumina_humanwg_6_v20.0600.0010.062
HS_refseq_to_illumina_humanwg_6_v30.0770.0020.078
HS_refseq_to_interpro0.2720.0080.280
HS_refseq_to_ipi0.2250.0150.240
HS_refseq_to_merops0.0080.0010.008
HS_refseq_to_pdb0.1350.0020.137
HS_refseq_to_pfam0.1060.0020.108
HS_refseq_to_phalanx_onearray0.0670.0010.068
HS_refseq_to_protein_id1.8110.0271.838
HS_refseq_to_refseq_dna0.0780.0060.083
HS_refseq_to_refseq_genomic0.0030.0000.003
HS_refseq_to_refseq_peptide0.1330.0010.134
HS_refseq_to_rfam0.0560.0010.057
HS_refseq_to_rfam_gene_name0.0030.0010.003
HS_refseq_to_rfam_transcript_name0.0030.0000.003
HS_refseq_to_smart0.0560.0000.056
HS_refseq_to_tigrfam0.0080.0000.009
HS_refseq_to_ucsc0.1390.0020.141
HS_refseq_to_unigene0.2920.0040.297
HS_refseq_to_uniprot_genename0.0560.0010.058
HS_refseq_to_uniprot_genename_transcript_name0.0040.0010.005
HS_refseq_to_uniprot_sptrembl0.0040.0000.004
HS_refseq_to_uniprot_swissprot0.0040.0000.004
HS_refseq_to_uniprot_swissprot_accession0.0030.0010.004
HS_refseq_to_wikigene_id0.0040.0010.005
HS_refseq_to_wikigene_name0.0640.0010.064
MM_conv_id0.0040.0000.005
MM_refseq_to_affy_mg_u74a0.0240.0010.024
MM_refseq_to_affy_mg_u74av20.0220.0010.023
MM_refseq_to_affy_mg_u74b0.0160.0000.017
MM_refseq_to_affy_mg_u74bv20.0180.0000.019
MM_refseq_to_affy_mg_u74c0.0070.0010.008
MM_refseq_to_affy_mg_u74cv20.0090.0010.010
MM_refseq_to_affy_moe430a0.0470.0010.047
MM_refseq_to_affy_moe430b0.0200.0000.021
MM_refseq_to_affy_moex_1_0_st_v10.5090.0040.513
MM_refseq_to_affy_mogene_1_0_st_v10.0530.0010.055
MM_refseq_to_affy_mouse430_20.0610.0010.062
MM_refseq_to_affy_mouse430a_20.0440.0010.045
MM_refseq_to_affy_mu11ksuba0.0200.0010.021
MM_refseq_to_affy_mu11ksubb0.0130.0010.013
MM_refseq_to_agilent_wholegenome0.0820.0050.087
MM_refseq_to_canonical_transcript_stable_id0.0810.0050.086
MM_refseq_to_ccds0.0440.0010.046
MM_refseq_to_codelink0.0460.0020.048
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0040.0010.005
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0050.0010.006
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0900.0060.096
MM_refseq_to_embl0.4150.0060.421
MM_refseq_to_ensembl_exon_id0.0040.0010.004
MM_refseq_to_ensembl_gene_id0.0510.0010.052
MM_refseq_to_ensembl_peptide_id0.0500.0020.053
MM_refseq_to_ensembl_transcript_id0.0550.0020.056
MM_refseq_to_entrezgene0.0450.0010.047
MM_refseq_to_fantom0.2240.0030.226
MM_refseq_to_illumina_mousewg_6_v10.0810.0010.082
MM_refseq_to_illumina_mousewg_6_v20.0690.0010.070
MM_refseq_to_interpro0.1460.0030.149
MM_refseq_to_ipi0.0030.0000.004
MM_refseq_to_merops0.0060.0000.007
MM_refseq_to_mgi_id0.2420.0020.244
MM_refseq_to_mgi_symbol0.0470.0010.048
MM_refseq_to_mgi_transcript_name0.0520.0010.066
MM_refseq_to_pdb0.0140.0010.015
MM_refseq_to_pfam0.0820.0010.082
MM_refseq_to_phalanx_onearray0.0460.0010.047
MM_refseq_to_protein_id0.6490.0050.654
MM_refseq_to_refseq_dna0.0670.0040.072
MM_refseq_to_refseq_peptide0.0940.0010.095
MM_refseq_to_rfam0.0060.0010.006
MM_refseq_to_rfam_gene_name0.0040.0000.005
MM_refseq_to_rfam_transcript_name0.0030.0000.003
MM_refseq_to_smart0.0410.0010.042
MM_refseq_to_tigrfam0.0100.0010.011
MM_refseq_to_ucsc0.0490.0010.049
MM_refseq_to_unigene0.0640.0010.066
MM_refseq_to_uniprot_genename0.0460.0010.047
MM_refseq_to_uniprot_genename_transcript_name0.0040.0010.005
MM_refseq_to_uniprot_sptrembl0.0040.0010.004
MM_refseq_to_uniprot_swissprot0.0040.0000.004
MM_refseq_to_uniprot_swissprot_accession0.0040.0000.004
MM_refseq_to_wikigene_id0.0030.0010.004
MM_refseq_to_wikigene_name0.0470.0010.048
TBL21.3680.1661.535
TBL2_HS2.0590.2822.342
TBL2_MM1.1530.1831.336
conv_id0.0040.0000.005
id_conv0.0450.0010.047