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BioC experimental data: CHECK report for miRNATarget on moscato2

This page was generated on 2014-10-04 17:41:48 -0700 (Sat, 04 Oct 2014).

Package 134/197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRNATarget 1.2.0
Y-h. Taguchi
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/miRNATarget
Last Changed Rev: 2799 / Revision: 3055
Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: miRNATarget
Version: 1.2.0
Command: rm -rf miRNATarget.buildbin-libdir && mkdir miRNATarget.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRNATarget.buildbin-libdir miRNATarget_1.2.0.tar.gz >miRNATarget-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=miRNATarget.buildbin-libdir --install="check:miRNATarget-install.out" --force-multiarch --no-vignettes --timings miRNATarget_1.2.0.tar.gz
StartedAt: 2014-10-04 10:35:36 -0700 (Sat, 04 Oct 2014)
EndedAt: 2014-10-04 10:38:08 -0700 (Sat, 04 Oct 2014)
EllapsedTime: 151.7 seconds
RetCode: 0
Status:  OK  
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf miRNATarget.buildbin-libdir && mkdir miRNATarget.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRNATarget.buildbin-libdir miRNATarget_1.2.0.tar.gz >miRNATarget-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=miRNATarget.buildbin-libdir --install="check:miRNATarget-install.out" --force-multiarch --no-vignettes --timings miRNATarget_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-2.14-data-experiment/meat/miRNATarget.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'miRNATarget/DESCRIPTION' ... OK
* this is package 'miRNATarget' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'miRNATarget' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.7Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [16s] OK
** running examples for arch 'x64' ... [16s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'E:/biocbld/bbs-2.14-data-experiment/meat/miRNATarget.Rcheck/00check.log'
for details.

miRNATarget.Rcheck/00install.out:


install for i386

* installing *source* package 'miRNATarget' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'miRNATarget' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'miRNATarget' as miRNATarget_1.2.0.zip
* DONE (miRNATarget)

miRNATarget.Rcheck/examples_i386/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.030.000.03
HS_refseq_to_affy_hc_g1100.010.000.01
HS_refseq_to_affy_hg_focus0.030.000.04
HS_refseq_to_affy_hg_u133_plus_20.100.000.09
HS_refseq_to_affy_hg_u133a0.040.000.05
HS_refseq_to_affy_hg_u133a_20.050.020.06
HS_refseq_to_affy_hg_u133b0.030.000.03
HS_refseq_to_affy_hg_u95a0.050.000.05
HS_refseq_to_affy_hg_u95av20.030.000.03
HS_refseq_to_affy_hg_u95b0.020.000.01
HS_refseq_to_affy_hg_u95c0.030.000.03
HS_refseq_to_affy_hg_u95d000
HS_refseq_to_affy_hg_u95e0.020.000.02
HS_refseq_to_affy_huex_1_0_st_v21.680.011.70
HS_refseq_to_affy_hugene_1_0_st_v10.070.000.06
HS_refseq_to_affy_hugenefl0.030.000.03
HS_refseq_to_affy_u133_x3p0.110.000.11
HS_refseq_to_agilent_cgh_44b0.010.000.02
HS_refseq_to_agilent_wholegenome0.190.020.20
HS_refseq_to_canonical_transcript_stable_id0.090.000.09
HS_refseq_to_ccds0.070.000.07
HS_refseq_to_codelink0.040.000.04
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k000
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.000.010.02
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2000
HS_refseq_to_embl1.050.001.04
HS_refseq_to_ensembl_exon_id000
HS_refseq_to_ensembl_gene_id0.080.000.08
HS_refseq_to_ensembl_peptide_id0.040.000.05
HS_refseq_to_ensembl_transcript_id0.110.000.11
HS_refseq_to_entrezgene0.110.000.11
HS_refseq_to_hgnc_id0.060.000.06
HS_refseq_to_hgnc_symbol0.050.020.06
HS_refseq_to_hgnc_transcript_name0.060.000.06
HS_refseq_to_illumina_humanht_120.070.000.06
HS_refseq_to_illumina_humanwg_6_v10.040.020.07
HS_refseq_to_illumina_humanwg_6_v20.050.010.06
HS_refseq_to_illumina_humanwg_6_v30.060.000.06
HS_refseq_to_interpro0.170.000.17
HS_refseq_to_ipi0.160.000.16
HS_refseq_to_merops0.010.000.02
HS_refseq_to_pdb0.130.000.12
HS_refseq_to_pfam0.090.000.09
HS_refseq_to_phalanx_onearray0.050.000.05
HS_refseq_to_protein_id1.240.021.26
HS_refseq_to_refseq_dna0.080.000.08
HS_refseq_to_refseq_genomic0.020.000.01
HS_refseq_to_refseq_peptide0.310.000.32
HS_refseq_to_rfam000
HS_refseq_to_rfam_gene_name0.000.010.01
HS_refseq_to_rfam_transcript_name000
HS_refseq_to_smart0.050.000.05
HS_refseq_to_tigrfam0.010.000.01
HS_refseq_to_ucsc0.060.000.07
HS_refseq_to_unigene0.080.000.07
HS_refseq_to_uniprot_genename0.060.000.07
HS_refseq_to_uniprot_genename_transcript_name000
HS_refseq_to_uniprot_sptrembl0.020.000.01
HS_refseq_to_uniprot_swissprot000
HS_refseq_to_uniprot_swissprot_accession0.020.000.02
HS_refseq_to_wikigene_id000
HS_refseq_to_wikigene_name0.040.020.06
MM_conv_id0.000.010.02
MM_refseq_to_affy_mg_u74a0.020.000.01
MM_refseq_to_affy_mg_u74av20.020.000.01
MM_refseq_to_affy_mg_u74b0.010.000.02
MM_refseq_to_affy_mg_u74bv20.020.000.01
MM_refseq_to_affy_mg_u74c0.020.000.02
MM_refseq_to_affy_mg_u74cv20.010.000.01
MM_refseq_to_affy_moe430a0.050.000.05
MM_refseq_to_affy_moe430b0.010.000.02
MM_refseq_to_affy_moex_1_0_st_v10.530.000.53
MM_refseq_to_affy_mogene_1_0_st_v10.110.000.11
MM_refseq_to_affy_mouse430_20.070.000.06
MM_refseq_to_affy_mouse430a_20.030.000.03
MM_refseq_to_affy_mu11ksuba000
MM_refseq_to_affy_mu11ksubb000
MM_refseq_to_agilent_wholegenome0.060.020.08
MM_refseq_to_canonical_transcript_stable_id0.060.010.08
MM_refseq_to_ccds0.030.000.03
MM_refseq_to_codelink0.030.000.04
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.020.000.01
MM_refseq_to_efg_agilent_wholegenome_4x44k_v1000
MM_refseq_to_efg_agilent_wholegenome_4x44k_v2000
MM_refseq_to_embl0.480.020.50
MM_refseq_to_ensembl_exon_id000
MM_refseq_to_ensembl_gene_id0.160.000.16
MM_refseq_to_ensembl_peptide_id0.040.000.04
MM_refseq_to_ensembl_transcript_id0.050.000.05
MM_refseq_to_entrezgene0.030.000.03
MM_refseq_to_fantom0.110.000.11
MM_refseq_to_illumina_mousewg_6_v10.060.000.06
MM_refseq_to_illumina_mousewg_6_v20.110.000.11
MM_refseq_to_interpro0.140.000.14
MM_refseq_to_ipi000
MM_refseq_to_merops000
MM_refseq_to_mgi_id0.030.000.03
MM_refseq_to_mgi_symbol0.110.000.11
MM_refseq_to_mgi_transcript_name0.050.000.05
MM_refseq_to_pdb0.010.000.01
MM_refseq_to_pfam0.080.000.08
MM_refseq_to_phalanx_onearray0.050.000.05
MM_refseq_to_protein_id0.370.000.39
MM_refseq_to_refseq_dna0.180.000.18
MM_refseq_to_refseq_peptide0.080.020.10
MM_refseq_to_rfam000
MM_refseq_to_rfam_gene_name000
MM_refseq_to_rfam_transcript_name000
MM_refseq_to_smart0.030.000.03
MM_refseq_to_tigrfam0.000.010.02
MM_refseq_to_ucsc0.050.000.05
MM_refseq_to_unigene0.040.000.04
MM_refseq_to_uniprot_genename0.050.000.05
MM_refseq_to_uniprot_genename_transcript_name000
MM_refseq_to_uniprot_sptrembl0.010.000.02
MM_refseq_to_uniprot_swissprot000
MM_refseq_to_uniprot_swissprot_accession000
MM_refseq_to_wikigene_id0.020.000.01
MM_refseq_to_wikigene_name0.030.000.03
TBL21.040.001.04
TBL2_HS1.780.081.86
TBL2_MM0.990.081.07
conv_id000
id_conv0.050.000.05

miRNATarget.Rcheck/examples_x64/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.020.000.02
HS_refseq_to_affy_hc_g1100.000.020.01
HS_refseq_to_affy_hg_focus0.030.000.04
HS_refseq_to_affy_hg_u133_plus_20.060.000.06
HS_refseq_to_affy_hg_u133a0.030.010.04
HS_refseq_to_affy_hg_u133a_20.030.020.05
HS_refseq_to_affy_hg_u133b0.040.000.03
HS_refseq_to_affy_hg_u95a0.010.010.03
HS_refseq_to_affy_hg_u95av20.030.000.03
HS_refseq_to_affy_hg_u95b0.020.000.02
HS_refseq_to_affy_hg_u95c0.010.000.02
HS_refseq_to_affy_hg_u95d0.000.020.02
HS_refseq_to_affy_hg_u95e0.020.000.01
HS_refseq_to_affy_huex_1_0_st_v21.770.091.88
HS_refseq_to_affy_hugene_1_0_st_v10.040.030.06
HS_refseq_to_affy_hugenefl0.010.020.03
HS_refseq_to_affy_u133_x3p0.080.000.08
HS_refseq_to_agilent_cgh_44b0.030.000.03
HS_refseq_to_agilent_wholegenome0.190.000.19
HS_refseq_to_canonical_transcript_stable_id0.080.000.08
HS_refseq_to_ccds0.030.010.04
HS_refseq_to_codelink0.040.000.05
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k000
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.020.000.01
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2000
HS_refseq_to_embl0.750.000.75
HS_refseq_to_ensembl_exon_id000
HS_refseq_to_ensembl_gene_id0.060.000.07
HS_refseq_to_ensembl_peptide_id0.060.000.06
HS_refseq_to_ensembl_transcript_id0.160.000.15
HS_refseq_to_entrezgene0.060.000.07
HS_refseq_to_hgnc_id0.050.000.04
HS_refseq_to_hgnc_symbol0.060.000.07
HS_refseq_to_hgnc_transcript_name0.060.000.06
HS_refseq_to_illumina_humanht_120.070.000.06
HS_refseq_to_illumina_humanwg_6_v10.040.000.05
HS_refseq_to_illumina_humanwg_6_v20.050.000.04
HS_refseq_to_illumina_humanwg_6_v30.050.020.07
HS_refseq_to_interpro0.20.00.2
HS_refseq_to_ipi0.170.000.17
HS_refseq_to_merops000
HS_refseq_to_pdb0.090.020.11
HS_refseq_to_pfam0.080.000.08
HS_refseq_to_phalanx_onearray0.050.000.04
HS_refseq_to_protein_id1.370.001.38
HS_refseq_to_refseq_dna0.060.000.07
HS_refseq_to_refseq_genomic000
HS_refseq_to_refseq_peptide0.110.000.10
HS_refseq_to_rfam0.050.000.05
HS_refseq_to_rfam_gene_name0.000.010.02
HS_refseq_to_rfam_transcript_name000
HS_refseq_to_smart0.040.000.04
HS_refseq_to_tigrfam000
HS_refseq_to_ucsc0.050.020.07
HS_refseq_to_unigene0.210.000.22
HS_refseq_to_uniprot_genename0.050.000.05
HS_refseq_to_uniprot_genename_transcript_name0.020.000.01
HS_refseq_to_uniprot_sptrembl000
HS_refseq_to_uniprot_swissprot000
HS_refseq_to_uniprot_swissprot_accession0.010.000.02
HS_refseq_to_wikigene_id000
HS_refseq_to_wikigene_name0.050.010.06
MM_conv_id000
MM_refseq_to_affy_mg_u74a0.020.020.03
MM_refseq_to_affy_mg_u74av20.010.000.02
MM_refseq_to_affy_mg_u74b0.020.000.01
MM_refseq_to_affy_mg_u74bv20.010.000.02
MM_refseq_to_affy_mg_u74c0.020.000.02
MM_refseq_to_affy_mg_u74cv2000
MM_refseq_to_affy_moe430a0.040.000.04
MM_refseq_to_affy_moe430b0.020.000.02
MM_refseq_to_affy_moex_1_0_st_v10.420.000.42
MM_refseq_to_affy_mogene_1_0_st_v10.050.000.05
MM_refseq_to_affy_mouse430_20.040.000.04
MM_refseq_to_affy_mouse430a_20.050.000.05
MM_refseq_to_affy_mu11ksuba0.020.000.02
MM_refseq_to_affy_mu11ksubb000
MM_refseq_to_agilent_wholegenome0.060.010.07
MM_refseq_to_canonical_transcript_stable_id0.060.000.07
MM_refseq_to_ccds0.030.000.03
MM_refseq_to_codelink0.030.000.03
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.020.000.01
MM_refseq_to_efg_agilent_wholegenome_4x44k_v1000
MM_refseq_to_efg_agilent_wholegenome_4x44k_v2000
MM_refseq_to_embl0.390.000.39
MM_refseq_to_ensembl_exon_id000
MM_refseq_to_ensembl_gene_id0.030.020.05
MM_refseq_to_ensembl_peptide_id0.050.000.05
MM_refseq_to_ensembl_transcript_id0.030.000.03
MM_refseq_to_entrezgene0.050.000.05
MM_refseq_to_fantom0.110.000.10
MM_refseq_to_illumina_mousewg_6_v10.040.020.06
MM_refseq_to_illumina_mousewg_6_v20.050.000.05
MM_refseq_to_interpro0.110.010.12
MM_refseq_to_ipi000
MM_refseq_to_merops000
MM_refseq_to_mgi_id0.180.000.18
MM_refseq_to_mgi_symbol0.030.000.03
MM_refseq_to_mgi_transcript_name0.040.020.05
MM_refseq_to_pdb0.010.000.02
MM_refseq_to_pfam0.060.000.06
MM_refseq_to_phalanx_onearray0.030.000.03
MM_refseq_to_protein_id0.490.000.48
MM_refseq_to_refseq_dna0.060.000.06
MM_refseq_to_refseq_peptide0.080.000.08
MM_refseq_to_rfam000
MM_refseq_to_rfam_gene_name000
MM_refseq_to_rfam_transcript_name0.000.020.02
MM_refseq_to_smart0.030.000.03
MM_refseq_to_tigrfam000
MM_refseq_to_ucsc0.030.000.03
MM_refseq_to_unigene0.060.000.07
MM_refseq_to_uniprot_genename0.030.000.03
MM_refseq_to_uniprot_genename_transcript_name000
MM_refseq_to_uniprot_sptrembl000
MM_refseq_to_uniprot_swissprot000
MM_refseq_to_uniprot_swissprot_accession0.000.010.02
MM_refseq_to_wikigene_id000
MM_refseq_to_wikigene_name0.040.000.05
TBL21.050.051.09
TBL2_HS1.640.121.76
TBL2_MM0.870.110.98
conv_id0.020.000.02
id_conv0.030.000.03