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BioC experimental data: CHECK report for dressCheck on moscato2

This page was generated on 2014-10-04 17:41:29 -0700 (Sat, 04 Oct 2014).

Package 57/197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dressCheck 0.2.0
Vincent Carey
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/dressCheck
Last Changed Rev: 2799 / Revision: 3055
Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: dressCheck
Version: 0.2.0
Command: rm -rf dressCheck.buildbin-libdir && mkdir dressCheck.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=dressCheck.buildbin-libdir dressCheck_0.2.0.tar.gz >dressCheck-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=dressCheck.buildbin-libdir --install="check:dressCheck-install.out" --force-multiarch --no-vignettes --timings dressCheck_0.2.0.tar.gz
StartedAt: 2014-10-04 09:45:35 -0700 (Sat, 04 Oct 2014)
EndedAt: 2014-10-04 09:49:31 -0700 (Sat, 04 Oct 2014)
EllapsedTime: 236.0 seconds
RetCode: 0
Status:  OK  
CheckDir: dressCheck.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf dressCheck.buildbin-libdir && mkdir dressCheck.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=dressCheck.buildbin-libdir dressCheck_0.2.0.tar.gz >dressCheck-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=dressCheck.buildbin-libdir --install="check:dressCheck-install.out" --force-multiarch --no-vignettes --timings dressCheck_0.2.0.tar.gz
###
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* using log directory 'E:/biocbld/bbs-2.14-data-experiment/meat/dressCheck.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'dressCheck/DESCRIPTION' ... OK
* this is package 'dressCheck' version '0.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'dressCheck' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 65.8Mb
  sub-directories of 1Mb or more:
    data         54.4Mb
    sampleRemap  11.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking Rd files ... NOTE
prepare_Rd: DrAsGiven.Rd:69-71: Dropping empty section \details
prepare_Rd: DrAsGiven.Rd:72-74: Dropping empty section \source
prepare_Rd: DrAsGiven.Rd:75-77: Dropping empty section \references
prepare_Rd: E2F3sig.probes.Rd:16-18: Dropping empty section \details
prepare_Rd: E2F3sig.probes.Rd:19-21: Dropping empty section \source
prepare_Rd: E2F3sig.probes.Rd:22-24: Dropping empty section \references
prepare_Rd: Src.probes.Rd:17-19: Dropping empty section \details
prepare_Rd: Src.probes.Rd:20-22: Dropping empty section \source
prepare_Rd: Src.probes.Rd:23-25: Dropping empty section \references
prepare_Rd: c119.Rd:97-99: Dropping empty section \source
prepare_Rd: c119.Rd:100-102: Dropping empty section \references
prepare_Rd: corrp116.Rd:71-73: Dropping empty section \details
prepare_Rd: corrp116.Rd:74-76: Dropping empty section \source
prepare_Rd: corrp116.Rd:77-79: Dropping empty section \references
prepare_Rd: e2f3Wts.Rd:19-21: Dropping empty section \details
prepare_Rd: e2f3Wts.Rd:22-24: Dropping empty section \source
prepare_Rd: e2f3Wts.Rd:25-27: Dropping empty section \references
prepare_Rd: platsigprobes.Rd:17-19: Dropping empty section \details
prepare_Rd: platsigprobes.Rd:20-22: Dropping empty section \source
prepare_Rd: platsigprobes.Rd:23-25: Dropping empty section \references
prepare_Rd: pwLines.Rd:127-129: Dropping empty section \details
prepare_Rd: pwLines.Rd:130-132: Dropping empty section \source
prepare_Rd: pwLines.Rd:133-135: Dropping empty section \references
prepare_Rd: srcWts.Rd:19-21: Dropping empty section \details
prepare_Rd: srcWts.Rd:22-24: Dropping empty section \source
prepare_Rd: srcWts.Rd:25-27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [11s] OK
** running examples for arch 'x64' ... [8s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'E:/biocbld/bbs-2.14-data-experiment/meat/dressCheck.Rcheck/00check.log'
for details.

dressCheck.Rcheck/00install.out:


install for i386

* installing *source* package 'dressCheck' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'dressCheck' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'dressCheck' as dressCheck_0.2.0.zip
* DONE (dressCheck)

dressCheck.Rcheck/examples_i386/dressCheck-Ex.timings:

nameusersystemelapsed
DrAsGiven1.360.011.38
E2F3sig.probes000
Src.probes000
c1192.170.082.25
corrp1161.300.031.32
e2f3Wts000
platsigprobes000
pwLines2.350.022.37
srcWts000

dressCheck.Rcheck/examples_x64/dressCheck-Ex.timings:

nameusersystemelapsed
DrAsGiven1.070.001.08
E2F3sig.probes000
Src.probes0.000.010.01
c1192.020.022.03
corrp1161.030.001.03
e2f3Wts0.000.010.02
platsigprobes000
pwLines1.990.052.04
srcWts0.020.000.02