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BioC experimental data: CHECK report for RforProteomics on moscato2

This page was generated on 2014-10-04 17:41:59 -0700 (Sat, 04 Oct 2014).

Package 163/197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RforProteomics 1.2.1
Laurent Gatto
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/RforProteomics
Last Changed Rev: 2954 / Revision: 3055
Last Changed Date: 2014-07-24 09:59:10 -0700 (Thu, 24 Jul 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: RforProteomics
Version: 1.2.1
Command: rm -rf RforProteomics.buildbin-libdir && mkdir RforProteomics.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RforProteomics.buildbin-libdir RforProteomics_1.2.1.tar.gz >RforProteomics-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=RforProteomics.buildbin-libdir --install="check:RforProteomics-install.out" --force-multiarch --no-vignettes --timings RforProteomics_1.2.1.tar.gz
StartedAt: 2014-10-04 10:54:46 -0700 (Sat, 04 Oct 2014)
EndedAt: 2014-10-04 11:00:56 -0700 (Sat, 04 Oct 2014)
EllapsedTime: 369.3 seconds
RetCode: 0
Status:  OK  
CheckDir: RforProteomics.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf RforProteomics.buildbin-libdir && mkdir RforProteomics.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RforProteomics.buildbin-libdir RforProteomics_1.2.1.tar.gz >RforProteomics-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=RforProteomics.buildbin-libdir --install="check:RforProteomics-install.out" --force-multiarch --no-vignettes --timings RforProteomics_1.2.1.tar.gz
###
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* using log directory 'E:/biocbld/bbs-2.14-data-experiment/meat/RforProteomics.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RforProteomics/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RforProteomics' version '1.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RforProteomics' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [11s] OK
** running examples for arch 'x64' ... [15s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
getThermoHelaPRTC    0   0.01    5.26
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

RforProteomics.Rcheck/00install.out:


install for i386

* installing *source* package 'RforProteomics' ...
** R
** inst
** preparing package for lazy loading
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.

install for x64

* installing *source* package 'RforProteomics' ...
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
* MD5 sums
packaged installation of 'RforProteomics' as RforProteomics_1.2.1.zip
* DONE (RforProteomics)

RforProteomics.Rcheck/examples_i386/RforProteomics-Ex.timings:

nameusersystemelapsed
getThermoHelaPRTC0.010.002.08

RforProteomics.Rcheck/examples_x64/RforProteomics-Ex.timings:

nameusersystemelapsed
getThermoHelaPRTC0.000.015.26