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BioC experimental data: CHECK report for RNAseqData.HNRNPC.bam.chr14 on zin2

This page was generated on 2014-10-04 17:40:43 -0700 (Sat, 04 Oct 2014).

Package 168/197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RNAseqData.HNRNPC.bam.chr14 0.2.0
H. Pages
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/RNAseqData.HNRNPC.bam.chr14
Last Changed Rev: 2799 / Revision: 3055
Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: RNAseqData.HNRNPC.bam.chr14
Version: 0.2.0
Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings RNAseqData.HNRNPC.bam.chr14_0.2.0.tar.gz
StartedAt: 2014-10-04 09:41:31 -0700 (Sat, 04 Oct 2014)
EndedAt: 2014-10-04 09:42:39 -0700 (Sat, 04 Oct 2014)
EllapsedTime: 68.1 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: RNAseqData.HNRNPC.bam.chr14.Rcheck
Warnings: 1

Command output

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### Running command:
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###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings RNAseqData.HNRNPC.bam.chr14_0.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-2.14-data-experiment/meat/RNAseqData.HNRNPC.bam.chr14.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RNAseqData.HNRNPC.bam.chr14/DESCRIPTION’ ... OK
* this is package ‘RNAseqData.HNRNPC.bam.chr14’ version ‘0.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RNAseqData.HNRNPC.bam.chr14’ can be installed ... [1s/4s] OK
* checking installed package size ... NOTE
  installed size is 420.3Mb
  sub-directories of 1Mb or more:
    extdata  420.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [22s/22s] WARNING
Found the following significant warnings:

  Warning: 'ngap' is deprecated.
  Warning: 'ngap' is deprecated.
  Warning: 'ngap' is deprecated.
  Warning: 'ngap' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU or elapsed time > 5s
                                      user system elapsed
RNAseqData.HNRNPC.bam.chr14-package 21.145  0.328  21.516
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.14-data-experiment/meat/RNAseqData.HNRNPC.bam.chr14.Rcheck/00check.log’
for details.

RNAseqData.HNRNPC.bam.chr14.Rcheck/00install.out:

* installing *source* package ‘RNAseqData.HNRNPC.bam.chr14’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (RNAseqData.HNRNPC.bam.chr14)

RNAseqData.HNRNPC.bam.chr14.Rcheck/RNAseqData.HNRNPC.bam.chr14-Ex.timings:

nameusersystemelapsed
RNAseqData.HNRNPC.bam.chr14-package21.145 0.32821.516