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BioC experimental data: CHECK report for LungCancerLines on moscato2

This page was generated on 2014-10-04 17:41:53 -0700 (Sat, 04 Oct 2014).

Package 123/197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LungCancerLines 0.2.0
Cory Barr
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/LungCancerLines
Last Changed Rev: 2799 / Revision: 3055
Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: LungCancerLines
Version: 0.2.0
Command: rm -rf LungCancerLines.buildbin-libdir && mkdir LungCancerLines.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LungCancerLines.buildbin-libdir LungCancerLines_0.2.0.tar.gz >LungCancerLines-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=LungCancerLines.buildbin-libdir --install="check:LungCancerLines-install.out" --force-multiarch --no-vignettes --timings LungCancerLines_0.2.0.tar.gz
StartedAt: 2014-10-04 10:30:20 -0700 (Sat, 04 Oct 2014)
EndedAt: 2014-10-04 10:33:19 -0700 (Sat, 04 Oct 2014)
EllapsedTime: 178.1 seconds
RetCode: 0
Status:  OK  
CheckDir: LungCancerLines.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf LungCancerLines.buildbin-libdir && mkdir LungCancerLines.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LungCancerLines.buildbin-libdir LungCancerLines_0.2.0.tar.gz >LungCancerLines-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=LungCancerLines.buildbin-libdir --install="check:LungCancerLines-install.out" --force-multiarch --no-vignettes --timings LungCancerLines_0.2.0.tar.gz
###
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* using log directory 'E:/biocbld/bbs-2.14-data-experiment/meat/LungCancerLines.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LungCancerLines/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'LungCancerLines' version '0.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'LungCancerLines' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'gmapR'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [6s] OK
** running examples for arch 'x64' ... [5s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.14-data-experiment/meat/LungCancerLines.Rcheck/00check.log'
for details.

LungCancerLines.Rcheck/00install.out:


install for i386

* installing *source* package 'LungCancerLines' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'LungCancerLines' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LungCancerLines' as LungCancerLines_0.2.0.zip
* DONE (LungCancerLines)

LungCancerLines.Rcheck/examples_i386/LungCancerLines-Ex.timings:

nameusersystemelapsed
LungCancerBamFiles0.050.000.04
LungCancerFastqFiles000
TP53Genome-package0.120.000.13

LungCancerLines.Rcheck/examples_x64/LungCancerLines-Ex.timings:

nameusersystemelapsed
LungCancerBamFiles0.040.000.04
LungCancerFastqFiles000
TP53Genome-package0.180.000.17