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BioC experimental data: CHECK report for KEGGdzPathwaysGEO on zin2

This page was generated on 2014-10-04 17:40:36 -0700 (Sat, 04 Oct 2014).

Package 116/197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGdzPathwaysGEO 1.2.0
Gaurav Bhatti
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/KEGGdzPathwaysGEO
Last Changed Rev: 2799 / Revision: 3055
Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: KEGGdzPathwaysGEO
Version: 1.2.0
Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.2.0.tar.gz
StartedAt: 2014-10-04 09:26:58 -0700 (Sat, 04 Oct 2014)
EndedAt: 2014-10-04 09:33:06 -0700 (Sat, 04 Oct 2014)
EllapsedTime: 368.4 seconds
RetCode: 0
Status:  OK 
CheckDir: KEGGdzPathwaysGEO.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-2.14-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... [1s/4s] OK
* checking installed package size ... NOTE
  installed size is 300.8Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘Biobase’ ‘BiocGenerics’
  All declared Imports should be used.
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [5s/5s] OK
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-2.14-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.

KEGGdzPathwaysGEO.Rcheck/00install.out:

* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KEGGdzPathwaysGEO)

KEGGdzPathwaysGEO.Rcheck/KEGGdzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE12970.0880.0000.086
GSE147620.1560.0080.162
GSE154710.3280.0280.354
GSE165150.1960.0160.214
GSE188420.4080.0160.424
GSE191880.6360.0320.670
GSE197280.1680.0080.175
GSE201530.1080.0040.113
GSE202910.0760.0040.078
GSE213540.1120.0080.121
GSE34670.1280.0040.129
GSE35850.0440.0000.042
GSE36780.1040.0040.106
GSE41070.1360.0040.141
GSE5281_EC0.1280.0040.130
GSE5281_HIP0.1280.0040.545
GSE5281_VCX0.1760.0120.190
GSE6956AA0.0440.0000.044
GSE6956C0.0480.0000.050
GSE7810.0440.0040.049
GSE86710.2800.0080.286
GSE87620.1520.0000.151
GSE93480.3840.0240.409
GSE94760.1320.0120.143
KEGGdzPathwaysGEO-package0.3360.0040.340