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BioC experimental data: CHECK report for GSVAdata on zin2

This page was generated on 2014-10-04 17:40:25 -0700 (Sat, 04 Oct 2014).

Package 88/197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSVAdata 1.0.0
Robert Castelo
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/GSVAdata
Last Changed Rev: 2799 / Revision: 3055
Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: GSVAdata
Version: 1.0.0
Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings GSVAdata_1.0.0.tar.gz
StartedAt: 2014-10-04 09:17:26 -0700 (Sat, 04 Oct 2014)
EndedAt: 2014-10-04 09:18:21 -0700 (Sat, 04 Oct 2014)
EllapsedTime: 55.2 seconds
RetCode: 0
Status:  OK 
CheckDir: GSVAdata.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD check --no-vignettes --timings GSVAdata_1.0.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-2.14-data-experiment/meat/GSVAdata.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSVAdata/DESCRIPTION’ ... OK
* this is package ‘GSVAdata’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSVAdata’ can be installed ... [5s/6s] OK
* checking installed package size ... NOTE
  installed size is 12.8Mb
  sub-directories of 1Mb or more:
    data  12.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [10s/10s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.14-data-experiment/meat/GSVAdata.Rcheck/00check.log’
for details.

GSVAdata.Rcheck/00install.out:

* installing *source* package ‘GSVAdata’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (GSVAdata)

GSVAdata.Rcheck/GSVAdata-Ex.timings:

nameusersystemelapsed
annotEntrez2202120.0520.0000.053
brainTxDbSets0.0040.0000.005
c2BroadSets3.4720.0723.551
commonPickrellHuang0.4440.0080.455
gbm_VerhaakEtAl0.4800.0080.492
genderGenesEntrez0.0000.0000.002
leukemia0.3160.0080.324