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BioC experimental data: CHECK report for FunciSNP.data on moscato2

This page was generated on 2014-10-04 17:41:48 -0700 (Sat, 04 Oct 2014).

Package 79/197HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FunciSNP.data 1.0.0
Simon G. Coetzee
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/FunciSNP.data
Last Changed Rev: 2799 / Revision: 3055
Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: FunciSNP.data
Version: 1.0.0
Command: rm -rf FunciSNP.data.buildbin-libdir && mkdir FunciSNP.data.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FunciSNP.data.buildbin-libdir FunciSNP.data_1.0.0.tar.gz >FunciSNP.data-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=FunciSNP.data.buildbin-libdir --install="check:FunciSNP.data-install.out" --force-multiarch --no-vignettes --timings FunciSNP.data_1.0.0.tar.gz
StartedAt: 2014-10-04 10:00:43 -0700 (Sat, 04 Oct 2014)
EndedAt: 2014-10-04 10:03:18 -0700 (Sat, 04 Oct 2014)
EllapsedTime: 154.8 seconds
RetCode: 0
Status:  OK  
CheckDir: FunciSNP.data.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   rm -rf FunciSNP.data.buildbin-libdir && mkdir FunciSNP.data.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FunciSNP.data.buildbin-libdir FunciSNP.data_1.0.0.tar.gz >FunciSNP.data-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=FunciSNP.data.buildbin-libdir --install="check:FunciSNP.data-install.out" --force-multiarch --no-vignettes --timings FunciSNP.data_1.0.0.tar.gz
###
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* using log directory 'E:/biocbld/bbs-2.14-data-experiment/meat/FunciSNP.data.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FunciSNP.data/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'FunciSNP.data' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FunciSNP.data' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.5Mb
  sub-directories of 1Mb or more:
    data      3.2Mb
    extdata   2.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [9s] OK
** running examples for arch 'x64' ... [10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.14-data-experiment/meat/FunciSNP.data.Rcheck/00check.log'
for details.

FunciSNP.data.Rcheck/00install.out:


install for i386

* installing *source* package 'FunciSNP.data' ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'FunciSNP.data' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FunciSNP.data' as FunciSNP.data_1.0.0.zip
* DONE (FunciSNP.data)

FunciSNP.data.Rcheck/examples_i386/FunciSNP.data-Ex.timings:

nameusersystemelapsed
FunciSNP.builtin.features0.470.020.49
lincRNA.hg19.rda0.500.020.51
refseqgenes.rda0.560.000.56

FunciSNP.data.Rcheck/examples_x64/FunciSNP.data-Ex.timings:

nameusersystemelapsed
FunciSNP.builtin.features0.280.000.28
lincRNA.hg19.rda0.520.010.53
refseqgenes.rda0.560.000.56