Back to the "Multiple platform build/check report"[A] B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.14: CHECK report for apComplex on moscato2

This page was generated on 2014-10-08 08:51:01 -0700 (Wed, 08 Oct 2014).

Package 46/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
apComplex 2.30.0
Denise Scholtens
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/apComplex
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: apComplex
Version: 2.30.0
Command: rm -rf apComplex.buildbin-libdir && mkdir apComplex.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=apComplex.buildbin-libdir apComplex_2.30.0.tar.gz >apComplex-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=apComplex.buildbin-libdir --install="check:apComplex-install.out" --force-multiarch --no-vignettes --timings apComplex_2.30.0.tar.gz
StartedAt: 2014-10-07 22:44:24 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 22:46:36 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 131.8 seconds
RetCode: 0
Status:  OK  
CheckDir: apComplex.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf apComplex.buildbin-libdir && mkdir apComplex.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=apComplex.buildbin-libdir apComplex_2.30.0.tar.gz >apComplex-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=apComplex.buildbin-libdir --install="check:apComplex-install.out" --force-multiarch --no-vignettes --timings apComplex_2.30.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/apComplex.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'apComplex/DESCRIPTION' ... OK
* this is package 'apComplex' version '2.30.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'apComplex' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'RBGL' 'graph'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plotComplex: warning in mget(complexMembers, env = org.Sc.sgdGENENAME,
  ifnotfound = NA): partial argument match of 'env' to 'envir'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [6s] OK
** running examples for arch 'x64' ... [7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'E:/biocbld/bbs-2.14-bioc/meat/apComplex.Rcheck/00check.log'
for details.

apComplex.Rcheck/00install.out:


install for i386

* installing *source* package 'apComplex' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'apComplex' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'apComplex' as apComplex_2.30.0.zip
* DONE (apComplex)

apComplex.Rcheck/examples_i386/apComplex-Ex.timings:

nameusersystemelapsed
FilteredEstimates0.050.020.06
HMSPCI0.150.000.15
Krogan000
LCjoin0.250.000.25
MBMEcHMSPCI0.020.000.02
MBMEcKrogan000
MBMEcTAP0.010.000.01
TAP0.110.010.13
apEX000
bhmaxSubgraph0.190.000.19
findComplexes0.090.000.09
gavinBP20060.160.020.17
kroganBPMat20060.420.060.49
mergeComplexes0.110.010.12
plotComplex0.050.000.09
sortComplexes0.030.000.03
yNameTAP0.000.020.02
yTAP0.010.000.02

apComplex.Rcheck/examples_x64/apComplex-Ex.timings:

nameusersystemelapsed
FilteredEstimates0.050.010.06
HMSPCI0.170.020.19
Krogan000
LCjoin0.330.000.52
MBMEcHMSPCI000
MBMEcKrogan0.000.020.01
MBMEcTAP0.010.000.02
TAP0.140.000.14
apEX0.020.000.02
bhmaxSubgraph0.250.000.24
findComplexes0.140.000.15
gavinBP20060.140.000.14
kroganBPMat20060.330.040.37
mergeComplexes0.120.020.14
plotComplex0.060.010.14
sortComplexes0.020.000.02
yNameTAP0.010.000.01
yTAP0.020.000.02