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BioC 2.14: CHECK report for ChIPseeker on moscato2

This page was generated on 2014-10-08 08:56:48 -0700 (Wed, 08 Oct 2014).

Package 143/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPseeker 1.0.11
Guangchuang Yu
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/ChIPseeker
Last Changed Rev: 93370 / Revision: 95116
Last Changed Date: 2014-08-13 21:22:54 -0700 (Wed, 13 Aug 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: ChIPseeker
Version: 1.0.11
Command: rm -rf ChIPseeker.buildbin-libdir && mkdir ChIPseeker.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ChIPseeker.buildbin-libdir ChIPseeker_1.0.11.tar.gz >ChIPseeker-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=ChIPseeker.buildbin-libdir --install="check:ChIPseeker-install.out" --force-multiarch --no-vignettes --timings ChIPseeker_1.0.11.tar.gz
StartedAt: 2014-10-07 23:40:58 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 23:54:19 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 800.3 seconds
RetCode: 0
Status:  OK  
CheckDir: ChIPseeker.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ChIPseeker.buildbin-libdir && mkdir ChIPseeker.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ChIPseeker.buildbin-libdir ChIPseeker_1.0.11.tar.gz >ChIPseeker-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=ChIPseeker.buildbin-libdir --install="check:ChIPseeker-install.out" --force-multiarch --no-vignettes --timings ChIPseeker_1.0.11.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/ChIPseeker.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ChIPseeker/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ChIPseeker' version '1.0.11'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ChIPseeker' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [225s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
annotatePeak  56.35   1.21   57.58
vennplot      53.66   0.81   54.87
plotDistToTSS 49.51   0.81   50.32
plotAnnoBar   48.91   0.85   49.75
** running examples for arch 'x64' ... [240s] OK
Examples with CPU or elapsed time > 5s
               user system elapsed
annotatePeak  61.07   1.03   62.14
plotAnnoBar   55.28   1.07   56.38
plotDistToTSS 53.12   1.11   54.22
vennplot      50.31   0.89   51.21
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

ChIPseeker.Rcheck/00install.out:


install for i386

* installing *source* package 'ChIPseeker' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ChIPseeker' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIPseeker' as ChIPseeker_1.0.11.zip
* DONE (ChIPseeker)

ChIPseeker.Rcheck/examples_i386/ChIPseeker-Ex.timings:

nameusersystemelapsed
annotatePeak56.35 1.2157.58
plotAnnoBar48.91 0.8549.75
plotAnnoPie000
plotDistToTSS49.51 0.8150.32
readPeakFile0.080.000.08
vennplot53.66 0.8154.87

ChIPseeker.Rcheck/examples_x64/ChIPseeker-Ex.timings:

nameusersystemelapsed
annotatePeak61.07 1.0362.14
plotAnnoBar55.28 1.0756.38
plotAnnoPie0.020.000.02
plotDistToTSS53.12 1.1154.22
readPeakFile0.090.000.10
vennplot50.31 0.8951.21