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BioC 2.14: BUILD report for BSgenome on zin2

This page was generated on 2014-10-08 08:48:00 -0700 (Wed, 08 Oct 2014).

Package 108/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.32.0
H. Pages
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/BSgenome
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK [ OK ] WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  WARNINGS  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: BSgenome
Version: 1.32.0
Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2014-10-07 18:39:30 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 18:40:47 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 77.0 seconds
RetCode: 0
Status:  OK 
PackageFile: BSgenome_1.32.0.tar.gz
PackageFileSize: 527.4 KiB

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenome
###
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* checking for file ‘BSgenome/DESCRIPTION’ ... OK
* preparing ‘BSgenome’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory ‘BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata’ is empty
WARNING: directory ‘BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata’ is empty
WARNING: directory ‘BSgenome/tests/unit’ is empty
* building ‘BSgenome_1.32.0.tar.gz’
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  ‘BSgenome/inst/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh’