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BioC experimental data: CHECK report for yeastGSData on perceval

This page was generated on 2014-04-04 17:29:12 -0700 (Fri, 04 Apr 2014).

Package 178/181HostnameOS / ArchBUILDCHECKBUILD BIN
yeastGSData 0.1.11
R. Gentleman
Snapshot Date: 2014-04-04 06:15:32 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_13/experiment/pkgs/yeastGSData
Last Changed Rev: 2533 / Revision: 2768
Last Changed Date: 2013-10-14 15:00:20 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ WARNINGS ] OK 

Summary

Package: yeastGSData
Version: 0.1.11
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch yeastGSData_0.1.11.tar.gz
StartedAt: 2014-04-04 11:50:30 -0700 (Fri, 04 Apr 2014)
EndedAt: 2014-04-04 11:53:44 -0700 (Fri, 04 Apr 2014)
EllapsedTime: 193.9 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: yeastGSData.Rcheck
Warnings: 1

Command output

* using log directory ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/yeastGSData.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘yeastGSData/DESCRIPTION’ ... OK
* this is package ‘yeastGSData’ version ‘0.1.11’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘yeastGSData’ can be installed ... [6s/7s] OK
* checking installed package size ... NOTE
  installed size is 65.2Mb
  sub-directories of 1Mb or more:
    extdata  64.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... NOTE
prepare_Rd: BayesFactorNGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorNGS.Rd:26-27: Dropping empty section \references
prepare_Rd: BayesFactorPGS.Rd:24-25: Dropping empty section \source
prepare_Rd: BayesFactorPGS.Rd:26-27: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  BayesFactorNGS.rda     46Kb     18Kb       xz
  BayesFactorPGS.rda     70Kb     32Kb       xz
  MIPSGS.rda             15Kb      9Kb       xz
  Mpact.rda             199Kb    136Kb    bzip2
  NEGGS.rda             600Kb     40Kb       xz
* checking examples ... [7s/7s] OK
Examples with CPU or elapsed time > 5s
       user system elapsed
NEGGS 5.761  0.266   6.026
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/yeastGSData.Rcheck/00check.log’
for details.

yeastGSData.Rcheck/00install.out:

* installing *source* package ‘yeastGSData’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (yeastGSData)

yeastGSData.Rcheck/yeastGSData-Ex.timings:

nameusersystemelapsed
BayesFactorNGS0.0340.0020.037
BayesFactorPGS0.0100.0000.011
BinaryGS0.0060.0000.006
MIPSGS0.0220.0000.021
Mpact0.0650.0010.068
MpactEvidenceCodes0.0080.0000.009
NEGGS5.7610.2666.026
POSPS0.0050.0040.009
PRS0.0030.0050.008