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BioC experimental data: CHECK report for seventyGeneData on moscato1

This page was generated on 2014-04-04 17:29:08 -0700 (Fri, 04 Apr 2014).

Package 156/181HostnameOS / ArchBUILDCHECKBUILD BIN
seventyGeneData 0.99.8
Luigi Marchionni
Snapshot Date: 2014-04-04 06:15:32 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_13/experiment/pkgs/seventyGeneData
Last Changed Rev: 2533 / Revision: 2768
Last Changed Date: 2013-10-14 15:00:20 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: seventyGeneData
Version: 0.99.8
Command: rm -rf seventyGeneData.buildbin-libdir && mkdir seventyGeneData.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=seventyGeneData.buildbin-libdir seventyGeneData_0.99.8.tar.gz >seventyGeneData-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=seventyGeneData.buildbin-libdir --install="check:seventyGeneData-install.out" --force-multiarch --no-vignettes --timings seventyGeneData_0.99.8.tar.gz && mv seventyGeneData.buildbin-libdir/* seventyGeneData.Rcheck/ && rmdir seventyGeneData.buildbin-libdir
StartedAt: 2014-04-04 12:33:12 -0700 (Fri, 04 Apr 2014)
EndedAt: 2014-04-04 12:36:12 -0700 (Fri, 04 Apr 2014)
EllapsedTime: 179.5 seconds
RetCode: 0
Status:  OK  
CheckDir: seventyGeneData.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/seventyGeneData.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'seventyGeneData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'seventyGeneData' version '0.99.8'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'seventyGeneData' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 148.5Mb
  sub-directories of 1Mb or more:
    data     55.5Mb
    extdata  92.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [22s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
seventyGeneData 11.01   0.23   11.27
vanDeVijver      7.05   0.11    7.17
** running examples for arch 'x64' ... [18s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
seventyGeneData 9.77   0.19    9.95
vanDeVijver     4.98   0.04    5.02
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/seventyGeneData.Rcheck/00check.log'
for details.

seventyGeneData.Rcheck/00install.out:


install for i386

* installing *source* package 'seventyGeneData' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'seventyGeneData' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seventyGeneData' as seventyGeneData_0.99.8.zip
* DONE (seventyGeneData)

seventyGeneData.Rcheck/examples_i386/seventyGeneData-Ex.timings:

nameusersystemelapsed
seventyGeneData11.01 0.2311.27
vanDeVijver7.050.117.17
vantVeer3.000.033.03

seventyGeneData.Rcheck/examples_x64/seventyGeneData-Ex.timings:

nameusersystemelapsed
seventyGeneData9.770.199.95
vanDeVijver4.980.045.02
vantVeer1.590.051.64