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BioC experimental data: CHECK report for ind1KG on zin1

This page was generated on 2014-04-04 17:28:49 -0700 (Fri, 04 Apr 2014).

Package 96/181HostnameOS / ArchBUILDCHECKBUILD BIN
ind1KG 0.1.17
VJ Carey
Snapshot Date: 2014-04-04 06:15:32 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_13/experiment/pkgs/ind1KG
Last Changed Rev: 2557 / Revision: 2768
Last Changed Date: 2013-11-01 13:36:05 -0700 (Fri, 01 Nov 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: ind1KG
Version: 0.1.17
Command: /home/biocbuild/bbs-2.13-bioc/R/bin/R CMD check --no-vignettes --timings ind1KG_0.1.17.tar.gz
StartedAt: 2014-04-04 09:24:30 -0700 (Fri, 04 Apr 2014)
EndedAt: 2014-04-04 09:26:11 -0700 (Fri, 04 Apr 2014)
EllapsedTime: 100.3 seconds
RetCode: 0
Status:  OK 
CheckDir: ind1KG.Rcheck
Warnings: 0

Command output

* using log directory ‘/home/biocbuild/bbs-2.13-data-experiment/meat/ind1KG.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ind1KG/DESCRIPTION’ ... OK
* this is package ‘ind1KG’ version ‘0.1.17’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ind1KG’ can be installed ... [2s/4s] OK
* checking installed package size ... NOTE
  installed size is 181.5Mb
  sub-directories of 1Mb or more:
    data     149.8Mb
    doc        1.0Mb
    pileups   30.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [22s/23s] OK
Examples with CPU or elapsed time > 5s
        user system elapsed
n240  13.105  0.312  14.459
c6snp  5.556  0.208   5.783
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.13-data-experiment/meat/ind1KG.Rcheck/00check.log’
for details.

ind1KG.Rcheck/00install.out:

* installing *source* package ‘ind1KG’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ind1KG)

ind1KG.Rcheck/ind1KG-Ex.timings:

nameusersystemelapsed
c6snp5.5560.2085.783
gw6c6.snp2400.2080.0240.234
n24013.105 0.31214.459
oregdf0.0040.0040.007
pup240_500k1.3720.0521.429
pup240_disc0.0600.0080.066
rsgdf0.0040.0040.009
yri240_60.3880.0080.404