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BioC experimental data: CHECK report for KEGGdzPathwaysGEO on moscato1

This page was generated on 2014-04-04 17:29:05 -0700 (Fri, 04 Apr 2014).

Package 101/181HostnameOS / ArchBUILDCHECKBUILD BIN
KEGGdzPathwaysGEO 1.1.3
Gaurav Bhatti
Snapshot Date: 2014-04-04 06:15:32 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_13/experiment/pkgs/KEGGdzPathwaysGEO
Last Changed Rev: 2533 / Revision: 2768
Last Changed Date: 2013-10-14 15:00:20 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: KEGGdzPathwaysGEO
Version: 1.1.3
Command: rm -rf KEGGdzPathwaysGEO.buildbin-libdir && mkdir KEGGdzPathwaysGEO.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGdzPathwaysGEO.buildbin-libdir KEGGdzPathwaysGEO_1.1.3.tar.gz >KEGGdzPathwaysGEO-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=KEGGdzPathwaysGEO.buildbin-libdir --install="check:KEGGdzPathwaysGEO-install.out" --force-multiarch --no-vignettes --timings KEGGdzPathwaysGEO_1.1.3.tar.gz && mv KEGGdzPathwaysGEO.buildbin-libdir/* KEGGdzPathwaysGEO.Rcheck/ && rmdir KEGGdzPathwaysGEO.buildbin-libdir
StartedAt: 2014-04-04 12:02:32 -0700 (Fri, 04 Apr 2014)
EndedAt: 2014-04-04 12:13:18 -0700 (Fri, 04 Apr 2014)
EllapsedTime: 646.0 seconds
RetCode: 0
Status:  OK  
CheckDir: KEGGdzPathwaysGEO.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGdzPathwaysGEO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KEGGdzPathwaysGEO' version '1.1.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KEGGdzPathwaysGEO' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 300.7Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  'Biobase' 'BiocGenerics'
  All declared Imports should be used.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [6s] OK
** running examples for arch 'x64' ... [6s] OK
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log'
for details.

KEGGdzPathwaysGEO.Rcheck/00install.out:


install for i386

* installing *source* package 'KEGGdzPathwaysGEO' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'KEGGdzPathwaysGEO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGdzPathwaysGEO' as KEGGdzPathwaysGEO_1.1.3.zip
* DONE (KEGGdzPathwaysGEO)

KEGGdzPathwaysGEO.Rcheck/examples_i386/KEGGdzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE12970.080.020.09
GSE147620.220.010.23
GSE154710.440.030.47
GSE165150.240.000.23
GSE188420.480.020.50
GSE191880.720.050.76
GSE197280.160.010.17
GSE201530.120.020.14
GSE202910.080.010.09
GSE213540.140.020.16
GSE34670.160.000.15
GSE35850.040.000.05
GSE36780.140.000.14
GSE41070.160.000.16
GSE5281_EC0.140.010.16
GSE5281_HIP0.180.000.17
GSE5281_VCX0.190.020.20
GSE6956AA0.050.000.04
GSE6956C0.050.000.05
GSE7810.070.000.07
GSE86710.340.010.35
GSE87620.160.020.18
GSE93480.400.050.45
GSE94760.140.010.15
KEGGdzPathwaysGEO-package0.440.020.46

KEGGdzPathwaysGEO.Rcheck/examples_x64/KEGGdzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE12970.150.000.16
GSE147620.220.020.23
GSE154710.390.040.43
GSE165150.220.020.23
GSE188420.440.050.48
GSE191880.700.040.75
GSE197280.170.000.18
GSE201530.140.000.14
GSE202910.080.000.08
GSE213540.150.000.16
GSE34670.140.010.15
GSE35850.050.000.05
GSE36780.130.000.13
GSE41070.170.000.17
GSE5281_EC0.140.020.16
GSE5281_HIP0.170.000.17
GSE5281_VCX0.210.000.20
GSE6956AA0.040.000.05
GSE6956C0.070.000.06
GSE7810.060.010.08
GSE86710.330.000.33
GSE87620.150.020.17
GSE93480.360.030.39
GSE94760.120.020.14
KEGGdzPathwaysGEO-package0.410.000.41