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BioC experimental data: CHECK report for GSVAdata on perceval

This page was generated on 2014-04-04 17:29:15 -0700 (Fri, 04 Apr 2014).

Package 75/181HostnameOS / ArchBUILDCHECKBUILD BIN
GSVAdata 0.99.11
Robert Castelo
Snapshot Date: 2014-04-04 06:15:32 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_13/experiment/pkgs/GSVAdata
Last Changed Rev: 2533 / Revision: 2768
Last Changed Date: 2013-10-14 15:00:20 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: GSVAdata
Version: 0.99.11
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GSVAdata_0.99.11.tar.gz
StartedAt: 2014-04-04 11:02:02 -0700 (Fri, 04 Apr 2014)
EndedAt: 2014-04-04 11:03:54 -0700 (Fri, 04 Apr 2014)
EllapsedTime: 112.1 seconds
RetCode: 0
Status:  OK 
CheckDir: GSVAdata.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/GSVAdata.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSVAdata/DESCRIPTION’ ... OK
* this is package ‘GSVAdata’ version ‘0.99.11’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSVAdata’ can be installed ... [9s/10s] OK
* checking installed package size ... NOTE
  installed size is 12.8Mb
  sub-directories of 1Mb or more:
    data  12.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [18s/18s] OK
Examples with CPU or elapsed time > 5s
             user system elapsed
c2BroadSets 6.514  0.157   6.731
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/GSVAdata.Rcheck/00check.log’
for details.

GSVAdata.Rcheck/00install.out:

* installing *source* package ‘GSVAdata’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (GSVAdata)

GSVAdata.Rcheck/GSVAdata-Ex.timings:

nameusersystemelapsed
annotEntrez2202120.0840.0140.098
brainTxDbSets0.0160.0020.018
c2BroadSets6.5140.1576.731
commonPickrellHuang0.5050.0640.571
gbm_VerhaakEtAl0.6390.0810.727
genderGenesEntrez0.0190.0040.023
leukemia0.3410.0330.374