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BioC experimental data: CHECK report for Fletcher2013b on moscato1

This page was generated on 2014-04-04 17:29:08 -0700 (Fri, 04 Apr 2014).

Package 61/181HostnameOS / ArchBUILDCHECKBUILD BIN
Fletcher2013b 0.99.3
Mauro Castro
Snapshot Date: 2014-04-04 06:15:32 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_13/experiment/pkgs/Fletcher2013b
Last Changed Rev: 2557 / Revision: 2768
Last Changed Date: 2013-11-01 13:36:05 -0700 (Fri, 01 Nov 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: Fletcher2013b
Version: 0.99.3
Command: rm -rf Fletcher2013b.buildbin-libdir && mkdir Fletcher2013b.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Fletcher2013b.buildbin-libdir Fletcher2013b_0.99.3.tar.gz >Fletcher2013b-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=Fletcher2013b.buildbin-libdir --install="check:Fletcher2013b-install.out" --force-multiarch --no-vignettes --timings Fletcher2013b_0.99.3.tar.gz && mv Fletcher2013b.buildbin-libdir/* Fletcher2013b.Rcheck/ && rmdir Fletcher2013b.buildbin-libdir
StartedAt: 2014-04-04 11:37:39 -0700 (Fri, 04 Apr 2014)
EndedAt: 2014-04-04 11:42:02 -0700 (Fri, 04 Apr 2014)
EllapsedTime: 263.4 seconds
RetCode: 0
Status:  OK  
CheckDir: Fletcher2013b.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/Fletcher2013b.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Fletcher2013b/DESCRIPTION' ... OK
* this is package 'Fletcher2013b' version '0.99.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Fletcher2013b' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 265.9Mb
  sub-directories of 1Mb or more:
    data  262.1Mb
    doc     3.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [7s] OK
** running examples for arch 'x64' ... [7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/Fletcher2013b.Rcheck/00check.log'
for details.

Fletcher2013b.Rcheck/00install.out:


install for i386

* installing *source* package 'Fletcher2013b' ...
** R
** data
** inst
** preparing package for lazy loading
Note: the specification for S3 class "AsIs" in package 'XMLRPC' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'XMLRPC' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.

install for x64

* installing *source* package 'Fletcher2013b' ...
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'XMLRPC' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
* MD5 sums
packaged installation of 'Fletcher2013b' as Fletcher2013b_0.99.3.zip
* DONE (Fletcher2013b)

Fletcher2013b.Rcheck/examples_i386/Fletcher2013b-Ex.timings:

nameusersystemelapsed
Fletcher2013b.gsea.regulons0.010.000.01
Fletcher2013b.pipelines000
miscellaneous0.730.020.75
rtni.data3.250.113.35
siRNA0.010.000.02

Fletcher2013b.Rcheck/examples_x64/Fletcher2013b-Ex.timings:

nameusersystemelapsed
Fletcher2013b.gsea.regulons000
Fletcher2013b.pipelines0.010.000.01
miscellaneous0.780.000.78
rtni.data3.030.163.18
siRNA0.010.000.02