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BioC experimental data: CHECK report for DLBCL on zin1

This page was generated on 2014-04-04 17:28:50 -0700 (Fri, 04 Apr 2014).

Package 42/181HostnameOS / ArchBUILDCHECKBUILD BIN
DLBCL 1.3.7
Marcus Dittrich
Snapshot Date: 2014-04-04 06:15:32 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_13/experiment/pkgs/DLBCL
Last Changed Rev: 2533 / Revision: 2768
Last Changed Date: 2013-10-14 15:00:20 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK [ WARNINGS ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS  OK 

Summary

Package: DLBCL
Version: 1.3.7
Command: /home/biocbuild/bbs-2.13-bioc/R/bin/R CMD check --no-vignettes --timings DLBCL_1.3.7.tar.gz
StartedAt: 2014-04-04 09:04:46 -0700 (Fri, 04 Apr 2014)
EndedAt: 2014-04-04 09:05:22 -0700 (Fri, 04 Apr 2014)
EllapsedTime: 36.7 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: DLBCL.Rcheck
Warnings: 1

Command output

* using log directory ‘/home/biocbuild/bbs-2.13-data-experiment/meat/DLBCL.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DLBCL/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DLBCL’ version ‘1.3.7’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DLBCL’ can be installed ... [2s/2s] OK
* checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    data   5.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  exprLym.rda        4.3Mb    2.6Mb       xz
  interactome.rda    990Kb    520Kb       xz
* checking examples ... [3s/3s] OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.13-data-experiment/meat/DLBCL.Rcheck/00check.log’
for details.

DLBCL.Rcheck/00install.out:

* installing *source* package ‘DLBCL’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (DLBCL)

DLBCL.Rcheck/DLBCL-Ex.timings:

nameusersystemelapsed
dataLym0.0320.0040.089
exprLym0.1160.0040.255
interactome1.4920.0361.531