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BioC experimental data: CHECK report for ChAMPdata on perceval

This page was generated on 2014-04-04 17:29:22 -0700 (Fri, 04 Apr 2014).

Package 28/181HostnameOS / ArchBUILDCHECKBUILD BIN
ChAMPdata 0.99.6
Tiffany Morris
Snapshot Date: 2014-04-04 06:15:32 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_13/experiment/pkgs/ChAMPdata
Last Changed Rev: 2533 / Revision: 2768
Last Changed Date: 2013-10-14 15:00:20 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK [ OK ] OK 

Summary

Package: ChAMPdata
Version: 0.99.6
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ChAMPdata_0.99.6.tar.gz
StartedAt: 2014-04-04 10:20:05 -0700 (Fri, 04 Apr 2014)
EndedAt: 2014-04-04 10:22:33 -0700 (Fri, 04 Apr 2014)
EllapsedTime: 148.3 seconds
RetCode: 0
Status:  OK 
CheckDir: ChAMPdata.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/ChAMPdata.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChAMPdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChAMPdata’ version ‘0.99.6’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChAMPdata’ can be installed ... [2s/6s] OK
* checking installed package size ... NOTE
  installed size is 190.7Mb
  sub-directories of 1Mb or more:
    data      67.0Mb
    extdata  123.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [50s/51s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
ChAMPdata-package 29.865  0.908  31.492
testDataSet       14.236  0.484  15.059
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-2.13-data-experiment/meat/ChAMPdata.Rcheck/00check.log’
for details.

ChAMPdata.Rcheck/00install.out:

* installing *source* package ‘ChAMPdata’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (ChAMPdata)

ChAMPdata.Rcheck/ChAMPdata-Ex.timings:

nameusersystemelapsed
ChAMPdata-package29.865 0.90831.492
probe.features2.8550.3703.410
probeInfoALL.lv0.6220.0780.709
testDataSet14.236 0.48415.059