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BioC 2.13: BUILD BIN report for dexus on perceval

This page was generated on 2014-04-05 09:53:03 -0700 (Sat, 05 Apr 2014).

Package 202/750HostnameOS / ArchBUILDCHECKBUILD BIN
dexus 1.2.2
Guenter Klambauer
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/dexus
Last Changed Rev: 85162 / Revision: 88450
Last Changed Date: 2013-12-30 05:50:04 -0800 (Mon, 30 Dec 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  WARNINGS [ OK ]

Summary

Package: dexus
Version: 1.2.2
Command: rm -rf dexus.buildbin-libdir && mkdir dexus.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh dexus_1.2.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R dexus.buildbin-libdir
StartedAt: 2014-04-05 05:20:26 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:20:32 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 5.4 seconds
RetCode: 0
Status:  OK 
PackageFile: dexus_1.2.2.tgz
PackageFileSize: 3.253 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=dexus.buildbin-libdir dexus_1.2.2.tar.gz'
>>>>>>> 

* installing *source* package ‘dexus’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c dexus.cpp -o dexus.o
dexus.cpp: In function ‘SEXPREC* dexus_impl(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, int*, SEXPREC*, SEXPREC*, SEXPREC*)’:
dexus.cpp:193: warning: unused variable ‘DEFAULT_R’
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o dexus.so dexus.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.13-bioc/meat/dexus.buildbin-libdir/dexus/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘dexus’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (dexus)


>>>>>>> 
>>>>>>> FIXING LINKS FOR dexus.buildbin-libdir/dexus/libs//dexus.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "dexus.buildbin-libdir/dexus/libs//dexus.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "dexus.buildbin-libdir/dexus/libs//dexus.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "dexus.buildbin-libdir/dexus/libs//dexus.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "dexus.buildbin-libdir/dexus/libs//dexus.so"