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This page was generated on 2014-04-05 09:50:43 -0700 (Sat, 05 Apr 2014).
| Package 365/750 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
| IdMappingAnalysis 1.6.0 Alex Lisovich
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |||||
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK | |||||
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| Package: IdMappingAnalysis |
| Version: 1.6.0 |
| Command: rm -rf IdMappingAnalysis.buildbin-libdir && mkdir IdMappingAnalysis.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=IdMappingAnalysis.buildbin-libdir IdMappingAnalysis_1.6.0.tar.gz >IdMappingAnalysis-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=IdMappingAnalysis.buildbin-libdir --install="check:IdMappingAnalysis-install.out" --force-multiarch --no-vignettes --timings IdMappingAnalysis_1.6.0.tar.gz && mv IdMappingAnalysis.buildbin-libdir/* IdMappingAnalysis.Rcheck/ && rmdir IdMappingAnalysis.buildbin-libdir |
| StartedAt: 2014-04-05 04:40:11 -0700 (Sat, 05 Apr 2014) |
| EndedAt: 2014-04-05 04:42:56 -0700 (Sat, 05 Apr 2014) |
| EllapsedTime: 165.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IdMappingAnalysis.Rcheck |
| Warnings: 0 |
* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/IdMappingAnalysis.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'IdMappingAnalysis/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'IdMappingAnalysis' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'IdMappingAnalysis' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'Biobase'
All declared Imports should be used.
Packages in Depends field not imported from:
'R.oo' 'rChoiceDialogs'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: DataFilter.Rd:41-42: Dropping empty section \arguments
prepare_Rd: Display.Rd:41-42: Dropping empty section \arguments
prepare_Rd: Misc.Rd:41-42: Dropping empty section \arguments
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [34s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
getBootstrap.JointUniquePairs 8.33 0.00 8.33
Bootstrap 7.77 0.02 7.78
** running examples for arch 'x64' ... [39s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
getBootstrap.JointUniquePairs 9.86 0 9.86
Bootstrap 8.38 0 8.38
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
'D:/biocbld/bbs-2.13-bioc/meat/IdMappingAnalysis.Rcheck/00check.log'
for details.
IdMappingAnalysis.Rcheck/00install.out:
install for i386 * installing *source* package 'IdMappingAnalysis' ... ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded install for x64 * installing *source* package 'IdMappingAnalysis' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'IdMappingAnalysis' as IdMappingAnalysis_1.6.0.zip * DONE (IdMappingAnalysis)
IdMappingAnalysis.Rcheck/examples_i386/IdMappingAnalysis-Ex.timings:
| name | user | system | elapsed | |
| 000-LB-.IdMapBase | 0.34 | 0.01 | 0.36 | |
| Bootstrap | 7.77 | 0.02 | 7.78 | |
| Corr | 0.5 | 0.0 | 0.5 | |
| CorrData | 0.17 | 0.00 | 0.18 | |
| CsvList.merge.Misc | 0 | 0 | 0 | |
| IdMap | 0.02 | 0.00 | 0.02 | |
| IdMapBase | 0.02 | 0.00 | 0.01 | |
| IdMapCounts | 0.35 | 0.00 | 0.36 | |
| IdMapDiff | 0.48 | 0.02 | 0.50 | |
| IdMapDiffCounts | 0.41 | 0.00 | 0.40 | |
| JointIdMap | 0.08 | 0.00 | 0.08 | |
| JointUniquePairs | 0.63 | 0.00 | 0.62 | |
| Mixture | 0.45 | 0.00 | 0.45 | |
| UniquePairs | 0.02 | 0.00 | 0.01 | |
| aligned.IdMapBase | 0.02 | 0.00 | 0.02 | |
| as.IdMap.UniquePairs | 0.03 | 0.00 | 0.03 | |
| as.MultiSet.CorrData | 0.72 | 0.02 | 0.74 | |
| as.UniquePairs.IdMap | 0.03 | 0.00 | 0.03 | |
| as.data.frame.IdMapBase | 0.08 | 0.00 | 0.08 | |
| as.data.frame.JointIdMap | 0.06 | 0.00 | 0.06 | |
| as.list.IdMap | 0.02 | 0.00 | 0.01 | |
| boxplot.JointUniquePairs | 0.09 | 0.00 | 0.10 | |
| byColNames.Subset | 0 | 0 | 0 | |
| byColumn.Subset | 0.02 | 0.00 | 0.02 | |
| byRow.Subset | 0.01 | 0.00 | 0.01 | |
| byRowNames.Subset | 0.02 | 0.00 | 0.02 | |
| clust.Mixture | 0.01 | 0.00 | 0.02 | |
| copy.Display | 0 | 0 | 0 | |
| corr.boxplot.JointUniquePairs | 0.11 | 0.00 | 0.11 | |
| corr.plot.JointUniquePairs | 0.06 | 0.00 | 0.06 | |
| create.Display | 0 | 0 | 0 | |
| create.UniquePairs | 0.08 | 0.00 | 0.08 | |
| diffCounts.plot.JointIdMap | 0.44 | 0.01 | 0.45 | |
| dim.IdMapBase | 0.00 | 0.02 | 0.01 | |
| dimnames.IdMapBase | 0.06 | 0.00 | 0.07 | |
| do.glm.JointUniquePairs | 0.01 | 0.00 | 0.02 | |
| ecdf.plot.JointIdMap | 0.25 | 0.00 | 0.25 | |
| equals.UniquePairs | 0.05 | 0.00 | 0.04 | |
| fisherTransform.DataFilter | 0 | 0 | 0 | |
| fisherTransformInverse.DataFilter | 0 | 0 | 0 | |
| fisherTransformJacobean.DataFilter | 0.01 | 0.00 | 0.02 | |
| getBootstrap.JointUniquePairs | 8.33 | 0.00 | 8.33 | |
| getCompoundEvents.IdMapDiffCounts | 0.34 | 0.00 | 0.34 | |
| getCompoundGroups.IdMapDiffCounts | 0.35 | 0.00 | 0.34 | |
| getCorr.JointUniquePairs | 0.08 | 0.00 | 0.08 | |
| getCorrData.JointUniquePairs | 0.2 | 0.0 | 0.2 | |
| getCorrDataFrame.JointUniquePairs | 0.02 | 0.00 | 0.01 | |
| getCounts.IdMap | 0.01 | 0.00 | 0.02 | |
| getCounts.JointIdMap | 0.16 | 0.00 | 0.15 | |
| getData.Corr | 0 | 0 | 0 | |
| getData.Mixture | 0 | 0 | 0 | |
| getDiff.JointIdMap | 0.29 | 0.00 | 0.30 | |
| getExperimentSet.CorrData | 0.11 | 0.00 | 0.11 | |
| getIdMapList.JointIdMap | 0.07 | 0.00 | 0.08 | |
| getMapNames.JointIdMap | 0.06 | 0.00 | 0.07 | |
| getMapNames.JointUniquePairs | 0.02 | 0.00 | 0.01 | |
| getMatch.UniquePairs | 0.03 | 0.00 | 0.03 | |
| getMatchInfo.JointIdMap | 0.08 | 0.00 | 0.08 | |
| getMatchInfo.JointUniquePairs | 0.42 | 0.00 | 0.42 | |
| getMixture.JointUniquePairs | 0.3 | 0.0 | 0.3 | |
| getSampleNames.CorrData | 0.02 | 0.00 | 0.01 | |
| getStats.IdMapCounts | 0.18 | 0.00 | 0.19 | |
| getStats.Mixture | 0 | 0 | 0 | |
| getUnionIdMap.JointIdMap | 0.44 | 0.00 | 0.44 | |
| getUniquePairs.Corr | 0.02 | 0.00 | 0.01 | |
| getUniquePairs.CorrData | 0 | 0 | 0 | |
| getUniquePairs.JointUniquePairs | 0 | 0 | 0 | |
| interactive.corr.boxplot.JointUniquePairs | 0.28 | 0.00 | 0.56 | |
| interactive.corr.plot.JointUniquePairs | 0.11 | 0.00 | 0.14 | |
| interactive.mixture.boxplot.JointUniquePairs | 0.46 | 0.03 | 0.48 | |
| interactive.mixture.plot.JointUniquePairs | 0.31 | 0.05 | 0.36 | |
| interactive.plot.CorrData | 0.05 | 0.00 | 0.05 | |
| interactive.plot.JointUniquePairs | 0 | 0 | 0 | |
| interleave.Misc | 0.01 | 0.00 | 0.02 | |
| line.loess.Display | 0 | 0 | 0 | |
| line.unsorted.Display | 0 | 0 | 0 | |
| logTen.DataFilter | 0.15 | 0.00 | 0.16 | |
| merge.IdMap | 0.75 | 0.00 | 0.75 | |
| minAvgCountConstraint.DataFilter | 0.14 | 0.00 | 0.14 | |
| minCountConstraint.DataFilter | 0.25 | 0.00 | 0.25 | |
| minCountGroupConstraint.DataFilter | 0.2 | 0.0 | 0.2 | |
| mixture.boxplot.JointUniquePairs | 0.41 | 0.01 | 0.42 | |
| mixture.plot.JointUniquePairs | 0.33 | 0.00 | 0.33 | |
| plot.Bootstrap | 0.11 | 0.00 | 0.11 | |
| plot.Corr | 0.08 | 0.00 | 0.08 | |
| plot.CorrData | 0.03 | 0.00 | 0.03 | |
| plot.IdMapCounts | 0.20 | 0.00 | 0.25 | |
| plot.IdMapDiffCounts | 0.64 | 0.00 | 0.64 | |
| plot.Mixture | 0.03 | 0.00 | 0.03 | |
| primaryIDs.IdMapBase | 0 | 0 | 0 | |
| primaryKey.CorrData | 0 | 0 | 0 | |
| primaryKey.IdMapBase | 0.02 | 0.00 | 0.02 | |
| primaryKey.Mixture | 0 | 0 | 0 | |
| progressMsg.Display | 0 | 0 | 0 | |
| removeNASeries.DataFilter | 0.36 | 0.00 | 0.36 | |
| secondaryKey.CorrData | 0 | 0 | 0 | |
| secondaryKey.IdMapBase | 0 | 0 | 0 | |
| secondaryKey.Mixture | 0 | 0 | 0 | |
| subsetCorr.JointUniquePairs | 0.02 | 0.00 | 0.02 | |
| subsetData.JointUniquePairs | 0.02 | 0.00 | 0.02 | |
| subsetGroups.JointUniquePairs | 0.59 | 0.00 | 0.59 | |
| summary.IdMapDiffCounts | 0.37 | 0.00 | 0.37 | |
| swapKeys.IdMap | 0.07 | 0.00 | 0.06 | |
| swapKeys.UniquePairs | 0.02 | 0.00 | 0.01 | |
| textBoundingBox.Display | 0 | 0 | 0 | |
| to.base.Misc | 0 | 0 | 0 | |
| to.binary.logical.Misc | 0 | 0 | 0 | |
| to.index.expr.Misc | 0.01 | 0.00 | 0.01 | |
| unique.UniquePairs | 0.08 | 0.00 | 0.08 | |
| words.Misc | 0 | 0 | 0 | |
| zoom.pars.Display | 0 | 0 | 0 | |
IdMappingAnalysis.Rcheck/examples_x64/IdMappingAnalysis-Ex.timings:
| name | user | system | elapsed | |
| 000-LB-.IdMapBase | 0.39 | 0.00 | 0.39 | |
| Bootstrap | 8.38 | 0.00 | 8.38 | |
| Corr | 0.56 | 0.00 | 0.56 | |
| CorrData | 0.22 | 0.00 | 0.22 | |
| CsvList.merge.Misc | 0.02 | 0.00 | 0.01 | |
| IdMap | 0.01 | 0.00 | 0.02 | |
| IdMapBase | 0.02 | 0.00 | 0.01 | |
| IdMapCounts | 0.36 | 0.00 | 0.36 | |
| IdMapDiff | 0.64 | 0.00 | 0.64 | |
| IdMapDiffCounts | 0.47 | 0.00 | 0.47 | |
| JointIdMap | 0.06 | 0.02 | 0.07 | |
| JointUniquePairs | 0.57 | 0.00 | 0.58 | |
| Mixture | 0.44 | 0.00 | 0.43 | |
| UniquePairs | 0 | 0 | 0 | |
| aligned.IdMapBase | 0.01 | 0.00 | 0.02 | |
| as.IdMap.UniquePairs | 0.03 | 0.00 | 0.03 | |
| as.MultiSet.CorrData | 0.86 | 0.00 | 0.86 | |
| as.UniquePairs.IdMap | 0.02 | 0.00 | 0.02 | |
| as.data.frame.IdMapBase | 0.09 | 0.00 | 0.09 | |
| as.data.frame.JointIdMap | 0.08 | 0.00 | 0.08 | |
| as.list.IdMap | 0.02 | 0.00 | 0.01 | |
| boxplot.JointUniquePairs | 0.09 | 0.00 | 0.10 | |
| byColNames.Subset | 0.01 | 0.00 | 0.01 | |
| byColumn.Subset | 0.02 | 0.00 | 0.02 | |
| byRow.Subset | 0.02 | 0.00 | 0.01 | |
| byRowNames.Subset | 0.02 | 0.00 | 0.01 | |
| clust.Mixture | 0 | 0 | 0 | |
| copy.Display | 0 | 0 | 0 | |
| corr.boxplot.JointUniquePairs | 0.10 | 0.00 | 0.31 | |
| corr.plot.JointUniquePairs | 0.07 | 0.00 | 0.06 | |
| create.Display | 0.01 | 0.00 | 0.02 | |
| create.UniquePairs | 0.08 | 0.00 | 0.08 | |
| diffCounts.plot.JointIdMap | 0.51 | 0.00 | 0.52 | |
| dim.IdMapBase | 0.02 | 0.00 | 0.01 | |
| dimnames.IdMapBase | 0.01 | 0.00 | 0.02 | |
| do.glm.JointUniquePairs | 0.03 | 0.00 | 0.03 | |
| ecdf.plot.JointIdMap | 0.22 | 0.00 | 0.22 | |
| equals.UniquePairs | 0.03 | 0.00 | 0.03 | |
| fisherTransform.DataFilter | 0 | 0 | 0 | |
| fisherTransformInverse.DataFilter | 0 | 0 | 0 | |
| fisherTransformJacobean.DataFilter | 0 | 0 | 0 | |
| getBootstrap.JointUniquePairs | 9.86 | 0.00 | 9.86 | |
| getCompoundEvents.IdMapDiffCounts | 0.47 | 0.00 | 0.47 | |
| getCompoundGroups.IdMapDiffCounts | 0.42 | 0.00 | 0.43 | |
| getCorr.JointUniquePairs | 0.08 | 0.00 | 0.07 | |
| getCorrData.JointUniquePairs | 0.23 | 0.00 | 0.24 | |
| getCorrDataFrame.JointUniquePairs | 0.03 | 0.00 | 0.03 | |
| getCounts.IdMap | 0.02 | 0.00 | 0.01 | |
| getCounts.JointIdMap | 0.16 | 0.00 | 0.16 | |
| getData.Corr | 0 | 0 | 0 | |
| getData.Mixture | 0 | 0 | 0 | |
| getDiff.JointIdMap | 0.27 | 0.00 | 0.27 | |
| getExperimentSet.CorrData | 0.14 | 0.00 | 0.14 | |
| getIdMapList.JointIdMap | 0.11 | 0.00 | 0.11 | |
| getMapNames.JointIdMap | 0.18 | 0.00 | 0.19 | |
| getMapNames.JointUniquePairs | 0 | 0 | 0 | |
| getMatch.UniquePairs | 0.03 | 0.00 | 0.03 | |
| getMatchInfo.JointIdMap | 0.06 | 0.00 | 0.07 | |
| getMatchInfo.JointUniquePairs | 0.69 | 0.00 | 0.69 | |
| getMixture.JointUniquePairs | 0.34 | 0.00 | 0.34 | |
| getSampleNames.CorrData | 0 | 0 | 0 | |
| getStats.IdMapCounts | 0.24 | 0.00 | 0.24 | |
| getStats.Mixture | 0.01 | 0.00 | 0.01 | |
| getUnionIdMap.JointIdMap | 0.5 | 0.0 | 0.5 | |
| getUniquePairs.Corr | 0.02 | 0.00 | 0.02 | |
| getUniquePairs.CorrData | 0 | 0 | 0 | |
| getUniquePairs.JointUniquePairs | 0 | 0 | 0 | |
| interactive.corr.boxplot.JointUniquePairs | 0.2 | 0.0 | 0.2 | |
| interactive.corr.plot.JointUniquePairs | 0.08 | 0.03 | 0.11 | |
| interactive.mixture.boxplot.JointUniquePairs | 0.37 | 0.02 | 0.39 | |
| interactive.mixture.plot.JointUniquePairs | 0.43 | 0.00 | 1.01 | |
| interactive.plot.CorrData | 0.12 | 0.00 | 0.13 | |
| interactive.plot.JointUniquePairs | 0 | 0 | 0 | |
| interleave.Misc | 0 | 0 | 0 | |
| line.loess.Display | 0.01 | 0.00 | 0.02 | |
| line.unsorted.Display | 0 | 0 | 0 | |
| logTen.DataFilter | 0.23 | 0.00 | 0.24 | |
| merge.IdMap | 1.16 | 0.00 | 1.15 | |
| minAvgCountConstraint.DataFilter | 0.26 | 0.00 | 0.27 | |
| minCountConstraint.DataFilter | 0.17 | 0.00 | 0.17 | |
| minCountGroupConstraint.DataFilter | 0.28 | 0.00 | 0.28 | |
| mixture.boxplot.JointUniquePairs | 0.35 | 0.00 | 0.34 | |
| mixture.plot.JointUniquePairs | 0.28 | 0.00 | 0.28 | |
| plot.Bootstrap | 0.11 | 0.00 | 0.11 | |
| plot.Corr | 0.07 | 0.00 | 0.08 | |
| plot.CorrData | 0.03 | 0.00 | 0.03 | |
| plot.IdMapCounts | 0.19 | 0.00 | 0.19 | |
| plot.IdMapDiffCounts | 0.81 | 0.00 | 0.81 | |
| plot.Mixture | 0.03 | 0.02 | 0.05 | |
| primaryIDs.IdMapBase | 0.01 | 0.00 | 0.01 | |
| primaryKey.CorrData | 0 | 0 | 0 | |
| primaryKey.IdMapBase | 0 | 0 | 0 | |
| primaryKey.Mixture | 0 | 0 | 0 | |
| progressMsg.Display | 0.02 | 0.00 | 0.01 | |
| removeNASeries.DataFilter | 0.40 | 0.00 | 0.41 | |
| secondaryKey.CorrData | 0.02 | 0.00 | 0.01 | |
| secondaryKey.IdMapBase | 0.02 | 0.00 | 0.02 | |
| secondaryKey.Mixture | 0 | 0 | 0 | |
| subsetCorr.JointUniquePairs | 0.03 | 0.00 | 0.04 | |
| subsetData.JointUniquePairs | 0.03 | 0.00 | 0.03 | |
| subsetGroups.JointUniquePairs | 0.91 | 0.00 | 0.91 | |
| summary.IdMapDiffCounts | 0.45 | 0.00 | 0.45 | |
| swapKeys.IdMap | 0.13 | 0.00 | 0.12 | |
| swapKeys.UniquePairs | 0.02 | 0.00 | 0.02 | |
| textBoundingBox.Display | 0 | 0 | 0 | |
| to.base.Misc | 0 | 0 | 0 | |
| to.binary.logical.Misc | 0.02 | 0.00 | 0.01 | |
| to.index.expr.Misc | 0.01 | 0.00 | 0.02 | |
| unique.UniquePairs | 0.10 | 0.00 | 0.09 | |
| words.Misc | 0.02 | 0.00 | 0.01 | |
| zoom.pars.Display | 0.01 | 0.00 | 0.02 | |